Data set for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

Data set and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

The file "dna_binding_protein_sequences.zip" has the testing and training sets from the paper:

RLL - "random_<train/test>_full_1000.csv"
RSL - "random_<train/test>_50.csv"
RS&LL - "random_<train/test>_50_1000.csv"
RLL where included positive examples have verified DNA binding activity - "random_<train/test>_hq_1000.csv"

The results files are named similarly.
The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab."  See code. 

The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"