Métodos de detección del SARS-CoV-2 en pacientes enfermos de COVID-19
Authors/Creators
- 1. Centro de Investigación en Ciencias Microbiológicas, Posgrado en Microbiología. Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Puebla, México
- 2. Escuela de Ingeniería en Mecatrónica de la Universidad Politécnica de Tlaxcala, Tlaxcala, México
Description
RESUMEN
El brote emergente de la enfermedad por coronavirus 2019 (COVID-19) continúa extendiéndose por todo el mundo. Demostrando su efecto dañino en muchos sistemas y órganos humanos; esto es de gran preocupación para la sociedad en general afectando la vida diaria y la economía mundial. Además, de causar una necesidad sin precedentes de utilizar métodos de diagnóstico rápidos y sensibles para detectar el virus, especialmente cuando las vacunas no están disponibles. Motivo por el cual el objetivo de la presente revisión fue comparar estudios publicados para obtener información sobre los métodos de detección del SARS-CoV-2 como: la reacción en cadena de la polimerasa con transcriptasa inversa (RT-qPCR), la amplificación isotérmica mediada por asa con transcriptasa inversa (RT-LAMP), las pruebas serológicas y los diferentes biosensores como: (i) los biosensores colorimétricos ópticos (fluorescentes), (ii) los biosensores electroquímicos (los potenciométricos y los amperométricos), (iii) los biosensores basados en aptámeros y (iv) los polímeros de impresión molecular (PIM). Además, se resumieron las ventajas y desventajas de las plataformas que están en la etapa de desarrollo y el crecimiento como nuevas tecnologías de detección para el diagnóstico del SARS-CoV-2.
ABSTRACT
The emerging outbreak of coronavirus disease 2019 (COVID-19) continues to spread around the world. Demonstrating its damaging effect on many systems and human organs; this is of great concern to society likewise it affects their daily life and the world economy. Caused an unprecedented need for rapid diagnostics for rapid and sensitive detection of the virus, especially when the vaccines are not available. This study aimed to compare published studies to obtain information on the detection methods of SARS-CoV-2 such as: the RT-qPCR, the RT-LAMP, the serological tests, and the different biosensors such as: (i) the optical colorimetric biosensors (fluorescent), (ii) the electrochemical biosensors (potentiometric and amperometric), (iii) the biosensors based on aptamers, and (iv) the molecular impress polymer (MIP). Also was summarized the advantages and disadvantages of new platforms that find in the development and growth stage as new detection technologies for diagnosing the SARS-CoV-2.
Files
4) Escobar-Muciño et al., 2020.pdf
Additional details
Identifiers
Related works
- Is identical to
- Journal article: https://repositorioinstitucional.buap.mx/handle/20.500.12371/9780 (URL)
References
- Fiorino S, Zippi M, Gallo C, Sifo D, Sabbatani S, Manfredi R, Leandri P. The rationale for a multi-step therapeutic approach based on antivirals and drugs with immunomodulatory activity in patients with coronavirus-SARS2-induced disease of different severity. Preprint. 2020:1-18.
- Ling CQ. Traditional Chinese medicine is a resource for drug discovery against 2019 novel coronavirus (SARS-CoV 2). J Integr Med. 2020;18(2): 87-88.
- Vellingiri B, Jayaramayya K, Iyer M, Narayanasamy A, Govindasamy V, Giridharan B, Ganesan S Venugopal A, Venkatesan D, Ganesan H, Rajagopalan K, Rahman PKSM, Cho SG, Kumar NS, Subramaniam MD. COVID-19: A promising cure for the global panic. Sci Total Environ. 2020; 725:1-19.
- Smith TR, Patel A, Ramos S, Elwood D, Zhu X, Yan J, Xu Z. Immunogenicity of a DNA vaccine candidate for COVID-19. Nat Commun. 2020; 11(1):1-13.
- Sitio web de la Universidad Johns Hopkins. Disponible en: https://coronavirus.jhu.edu/map.html). Revisado el 23 de agosto 2020.
- Talebian S, Wallace GG, Schroeder A, Stellacci F, Conde J. Nanotechnology-based disinfectants and sensors for SARS-CoV-2. Nat Nanotechnol. 2020; 15: 618–621.
- Sitio web de la ONU. Disponible en: https://coronavirus.onu.org.mx/). Revisado el 17 de octubre de 2020.
- Méndez-Arriaga F. The temperature and regional climate effects on communitarian COVID-19 contagion in Mexico throughout phase 1. Sci Total Environ. 2020; 735:1-23.
- Suárez V, Quezada MS, Ruiz SO, De Jesús ER. Epidemiology of COVID-19 in Mexico: from the 27th of February to the 30th of April 2020. Rev Clín Esp (English Edition). 2020:1-8.
- Berumen J, Schmulson M, Alegre J, Guerrero G, Olaiz G, Wong-Chew RM. Risk of infection and hospitalization by COVID-19 in México: a case-control study. MedRxiv. 2020:1-26.
- Hernández-Garduño E. Obesity is the comorbidity more strongly associated for COVID-19 in México. A case-control study. Obes Res Clin Pract. 2020;14(4):375–379.
- De León-Martínez LD, Palacios-Ramírez A, Rodriguez-Aguilar M, Flores-Ramírez R. Critical review of social, environmental and health risk factors in the mexican indigenous population and their capacity to respond to the COVID-19. Sci Total Environ. 2020; 733:1-6.
- Mendez-Dominguez N, Alvarez-Baeza A, Carrillo G. Demographic and Health Indicators in Correlation to Interstate Variability of Incidence, Confirmation, Hospitalization, and Lethality in Mexico: Preliminary Analysis from Imported and Community Acquired Cases during COVID-19 Outbreak. Int J Environ Res Public Health. 2020;17(12):1-11.
- Rosales-Mendoza S. Will plant-made biopharmaceuticals play a role in the fight against COVID-19?. Expert Opin Biol Ther. 2020; 20(6):545–548.
- Block P, Hoffman M, Raabe IJ, Dowd JB, Rahal C, Kashyap R, Mills MC. Social network-based distancing strategies to flatten the COVID-19 curve in a post-lockdown world. Nat Hum Behav. 2020; 4:588–596.
- Acuña-Zegarra MA, Santana-Cibrian M, Velasco-Hernández JX. Modeling behavioral change and COVID-19 containment in Mexico: A trade-off between lockdown and compliance. Math Biosci. 2020; 325:1-10.
- Qiu Y, Wu D, Ning W, Zhang J, Shu T, Huang C, Li R. Postmortem tissue proteomics reveals the pathogenesis of multiorgan injuries of COVID-19. Res square. 2020:1-23.
- Sitio web de biorrender. Disponible en: https://biorender.com/covid-vaccine- tracker/details/v-0CV3/bacille-calmette- guerin-bcg. Revisado el 15 de junio 2020.
- Huang L, Zhang X, Zhang X, Wei Z, Zhang L, Xu J. Rapid asymptomatic transmission of COVID-19 during the incubation period demonstrating strong infectivity in a cluster of youngsters aged 16-23 years outside Wuhan and characteristics of young patients with COVID-19: a prospective contact-tracing study. J Infect. 2020a;80(6):1-13.
- Santiago I. Trends and innovations in biosensors for COVID‐19 mass testing. ChemBioChem. 2020; 21:1-11.
- Mousavizadeh L, Ghasemi S. Genotype and phenotype of COVID-19: Their roles in pathogenesis. J Microbiol Immunol Infect. 2020:1-5.
- Shereen MA, Khan S, Kazmi A, Bashir N, Siddique, R. COVID-19 infection: Origin, transmission, and characteristics of human coronaviruses. J Adv Res. 2020. 24: 91-98.
- Michalska K, Kim Y, Jedrzejczak R, Maltseva NI, Stols L, Endres M, Joachimiak A. Crystal structures of SARS-CoV-2 ADP-ribose phosphatase (ADRP): from the apo form to ligand complexes. bioRxiv. 2020:1-24.
- Jin Z, Du X, Xu Y, Deng Y, Liu M, Zhao Y, Duan Y. Structure of M pro from SARS-CoV-2 and discovery of its inhibitors. Nature. 2020; 582:1-24.
- Gao Y, Yan L, Huang Y, Liu F, Zhao Y, Cao L, Ge J. Structure of the RNA-dependent RNA polymerase from COVID-19 virus. Sci. 2020;368(6492):779-782.
- Walls AC, Park YJ, Tortorici MA, Wall A, McGuire AT, Veesler D. Structure, function, and antigenicity of the SARS-CoV-2 spike glycoprotein. Cell. 2020;181(2):81-292.
- Ben-Ami R, Klochendler A, Seidel M, Sido T, Gurel-Gurevich O, Yassour M. Large-scale implementation of pooled RNA extraction and RT-PCR for SARS-CoV-2 detection. Clin Microbiol Infect. 2020; 26:1248-1253.
- Russell SM, Alba-Patiño A, Baron E, Borges M, González-Freire M, de la Rica, R. Biosensors for managing the COVID-19 cytokine storm: challenges ahead. ACS Sensors. 2020; 5:1506−1513.
- Dashraath P, Jeslyn WJL, Karen LMX, Min LL, Sarah L, Biswas A. Coronavirus disease 2019 (COVID-19) pandemic and pregnancy. Am J Obstet Gynecol. 2020:521-531.
- Ranoa DRE, Holland RL, Alnaji FG, Green KJ, Wang L, Brooke CB, Burke MD. Saliva-based molecular testing for SARS-CoV-2 that bypasses RNA extraction. BioRxiv. 2020:1-35.
- Chan JFW, Yip CCY, To KKW, Tang THC, Wong SCY, Leung KH, Choi GKY. Improved molecular diagnosis of COVID-19 by the novel, highly sensitive and specific COVID-19-RdRp/Hel real-time reverse transcription-PCR assay validated in vitro and with clinical specimens. J Clin Microbiol. 2020:58(5);1-33.
- Tahamtan A, Ardebili A. Real-time RT-PCR in COVID-19 detection: issues affecting the results. Expert Rev Mol Diagn. 2020;20(5):453-454.
- Sethuraman N, Jeremiah SS, Ryo A. Interpreting diagnostic tests for SARS-CoV-2. JAMA. 2020 323(22):2249-225.
- Zhou Y, Guo S, He Y, Zuo Q, Liu D, Xia, M. COVID-19 is distinct from SARS-CoV-2-negative community-acquired pneumonia. Front Cell Infect Microbiol. 2020;10 (322):1.
- Ai T, Yang Z, Hou H, Zhan C, Chen C, Lv W. Correlation of chest CT and RT-PCR testing in coronavirus disease 2019 (COVID-19) in China: a report of 1014 cases. Radiol. 2020; 296: 32–40.
- Yang W, Yan F. Patients with RT-PCR-confirmed COVID-19 and normal chest CT. Radiol. 2020;295(2):1.
- Li Z, Yi Y, Luo X, Xiong N, Liu Y, Li S, Zhang Y. Development and clinical application of a rapid IgM‐IgG combined antibody test for SARS‐CoV‐2 infection diagnosis. J Med Virol. 2020: 92(9):1518-1524.
- Yuan J, Kou S, Liang Y, Zeng J, Pan Y, Liu L. PCR assays turned positive in 25 discharged COVID-19 patients. Clin Infect Dis. 2020:1-12.
- Long QX, Tang XJ, Shi QL, Li Q, Deng HJ, Yuan J. Clinical and immunological assessment of asymptomatic SARS-CoV-2 infections. Nat Med. 2020:26:1200–1204.
- Duggan NM, Ludy SM, Shannon BC, Reisner AT, Wilcox SR. Is novel coronavirus 2019 reinfection possible? Interpreting dynamic SARS-CoV-2 test results through a case report. Am J Emerg Med. 2020:1-3.
- Roy S. COVID-19 Reinfection: Myth or Truth?. SN Comp Clin Med. 2020:1-4
- Sitio web de bnonews disponible en: https://bnonews.com/index.php/2020/08/covid
- Lim J, Jeon S, Shin HY, Kim MJ, Seong YM, Lee WJ. Case of the index patient who caused tertiary transmission of COVID-19 infection in Korea: the application of lopinavir/ritonavir for the treatment of COVID-19 infected pneumonia monitored by quantitative RT-PCR. J Korean Med Sci. 2020;35(6);1-6.
- Alzamora MC, Paredes T, Caceres D, Webb CM, Valdez LM, La Rosa M. Severe COVID-19 during pregnancy and possible vertical transmission. Am J Perinatol. 2020; 37(8): 861–865.
- Zeng H, Xu C, Fan J, Tang Y, Deng Q, Zhang W, Long X. Antibodies in infants born to mothers with COVID-19 pneumonia. JAMA.2020;323(18):1848-1849.
- Thi VLD, Herbst K, Boerner K, Meurer M, Kremer LP, Kirrmaier D. A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples. Sci Transl Med. 2020;12(556):1-15.
- Yan C, Cui J, Huang L, Du B, Chen L, Xue G. Rapid and visual detection of 2019 novel coronavirus (SARS-CoV-2) by a reverse transcription loop-mediated isothermal amplification assay. Clin Microbiol Infect. 2020; 26:773-779.
- Yang W, Dang X, Wang Q, Xu M, Zhao Q, Zhou Y. Rapid detection of SARS-CoV-2 using reverse transcription RT-LAMP method. MedRxiv. 2020:1-25.
- Kim H, Kang M, Park E, Chung DR, Kim J, Hwang ES. A Simple and Multiplex Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of SARS-CoV. Biochip J. 2019;13(4):341-351.
- Park GS, Ku K, Baek SH, Kim SJ, Kim SI, Kim BT, Maeng JS. Development of reverse transcription loop-mediated isothermal amplification (RT-LAMP) assays targeting SARS-CoV-2. J Mol Diagn. 2020;22(6):729-735.
- Wei S, Kohl E, Djandji A, Morgan S, Whittier S, Mansukhani M, Suh Y. Field-deployable, rapid diagnostic testing of saliva samples for SARS-CoV-2. medRxiv. 2020; 1-10.
- Huang WE, Lim B, Hsu CC, Xiong D, Wu W, Yu Y, Chang H. RT‐LAMP for rapid diagnosis of coronavirus SARS‐CoV‐2. Microb biotechnol. 2020b;13(4):950-961.
- Osterdahl M, Lee K, Ni Lochlainn M, Wilson S, Douthwaite S, Horsfall R. Detecting SARS-CoV-2 at point of care: Preliminary data comparing Loop-mediated isothermal amplification (LAMP) to PCR. MedRxiv. 2020:1-9.
- Sánchez E, Nina M, Aguirre P, Arce M, Toro N, Vilela. Amplificación isotérmica mediada por LOOP (LAMP) de ácidos nucleicos en el diagnóstico clínico. CON-CIENCIA Farm y Bioq, 2014;2(1):1125-138.
- Poon LL, Wong BW, Ma EH, Chan KH, Chow LM, Abeyewickreme W, Peiris JM. Sensitive and inexpensive molecular test for falciparum malaria: detecting Plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin Chem. 2006:52(2), 303-306.
- Esbin MN, Whitney ON, Chong S, Maurer A, Darzacq X, Tjian R. Overcoming the bottleneck to widespread testing: A rapid review of nucleic acid testing approaches for COVID-19 detection. RNA. 2020: 1-21.
- San Tang M, Case JB, Franks CE, Chen RE, Anderson NW, Henderson JP. Association between neutralizing antibodies to SARS-CoV-2 and commercial serological assays. BioRxiv. 2020:1-27.
- Jiang HW, Li Y, Zhang HN, Wang W, Yang X, Qi H. SARS-CoV-2 proteome microarray for global profiling of COVID-19 specific IgG and IgM responses. Nat Commun. 2020 ;11(1) :1-11.
- Whitman JD, Hiatt J, Mowery CT, Shy BR, Yu R, Yamamoto TN. Test performance evaluation of SARS-CoV-2 serological assays. MedRxiv. 2020:1-28.
- Sitio web de la OMS. Disponible en: https://www.who.int/es/emergencies/diseases/ novel-coronavirus- 2019?gclid=Cj0KCQjw8rT8BRCbARIsALWi OvSvgUyPINM7ZSZ7hRb48L_ULyvyXd4E_ 5_BYPuxhPT_1Ai9cyDmbaYaArOKEALw_ wcB. Revisado en agosto 2020.
- Xiang F, Wang X, He X, Peng Z, Yang B, Zhang J, Wei X. Antibody detection and dynamic characteristics in patients with COVID-19. Clin Infect Dis. 2020:1-5.
- Liu T, Wu S, Tao H, Zeng G, Zhou F, Guo F, Wang X. Prevalence of IgG antibodies to SARS-CoV-2 in Wuhan-implications for the ability to produce long-lasting protective antibodies against SARS-CoV-2. MedRxiv. 2020; 92:1518-1524.
- Jalandra R, Yadav AK, Verma D, Dalal N, Sharma M, Singh R. Strategies and perspectives to develop SARS-CoV-2 detection methods and diagnostics. Biomed Pharmacother. 2020; 129:1-10.
- Xu Z, Chen X, Dong S. Electrochemical biosensors based on advanced bioimmobilization matrices. Trends Analyt Chem. 2006;25(9):899-908.
- Pisoschi AM. Biosensors as bio-based materials in chemical analysis: a review. J Biobased Mater Bio.2013;7(1):19-38.
- Nag P, Sadani K, Mukherji S. Optical fiber sensors for rapid screening of COVID-19. Trans of the Indian Nat Acad of Engr. 2020;5(2):233-236.
- Choi JR. Development of Point-of-Care Biosensors for COVID-19. Front Chem. 2020 ;8(517):1-10.
- Huang JC, Chang YF, Chen KH, Su LC, Lee CW, Chen CC, Chou C. Detection of severe acute respiratory syndrome (SARS) coronavirus nucleocapsid protein in human serum using a localized surface plasmon coupled fluorescence fiber-optic biosensor. Biosens Bioelectron. 2009b;25(2):320-325.
- Kumar R, Nagpal S, Kaushik S, Mendiratta S. COVID-19 diagnostic approaches: different roads to the same destination. Virus Dis. 2020;31(2):97-105.
- Seo G, Lee G, Kim MJ, Baek SH, Choi M, Ku KB, Kim SJ. Rapid detection of COVID-19 causative virus (SARS-CoV-2) in human nasopharyngeal swab specimens using field-effect transistor-based biosensor. ACS nano. 2020; 4:5135−5142.
- Javaid M, Haleem A, Vaishya R, Bahl S, Suman R, Vaish A. Industry 4.0 technologies and their applications in fighting COVID-19 pandemic. Diabetes Meta Syndr. 2020;14(4):419–422.
- Huang Y, Dong X, Liu Y, Li LJ, Chen P. Graphene-based biosensors for detection of bacteria and their metabolic activities. J Mater Chem. 2011c; 21:12358-12362.
- Kilianski A, Mielech AM, Deng X, Baker SC. Assessing activity and inhibition of middle east respiratory syndrome coronavirus papain-like and 3C-like proteases using luciferase-based biosensors. J Virol. 2013;87(21):11955-11962.
- Sípová H, Zhang S, Dudley AM, Galas D, Wang K, Homola J. Surface plasmon resonance biosensor for rapid label-free detection of microribonucleic acid at subfemtomole level. Anal Chem. 2010; 82(24):10110-5.
- Qiu G, Gai Z, Tao Y, Schmitt J, Kullak-Ublick GA, Wang J. Dual-Functional Plasmonic Photothermal Biosensors for Highly Accurate Severe Acute Respiratory Syndrome Coronavirus 2 Detection. ACS Nano. 2020b 26;14(5):5268-5277.
- Zhang X, Qi Q, Jing Q, Ao S, Esbin Zhang Z, Ding M, Zhang Z. Electrical probing of COVID-19 espicula protein receptor binding domain via a graphene field-effect transistor. arXiv. 2020b. 1-20.
- Zhu X, Wang X, Han L, Chen T, Wang L, Li H, Mei X. Reverse transcription loop-mediated isothermal amplification combined with nanoparticles-based biosensor for diagnosis of COVID-19. MedRxiv. 2020:1-19.
- Tripathy S, Singh SG. Label-free electrochemical detection of DNA hybridization: A method for COVID-19 diagnosis. Trans of the Indian Nat Acad of Engr. 2020; 25:1-5.
- Laštovička-Medin G. Visualizing "coronavirus": Engaging with invisible threats through prototyping air pollution demonstration tool with Arduino. In 2020 9th Mediterranean Conference on Embedded Computing (MECO). 2020;1-5.
- Cacovean D, Ioana I, Nitulescu G. IoT System in diagnosis of COVID-19 patients. Inform Econom. 2020;24(2):75-89.
- Mavrikou S, Moschopoulou G, Tsekouras V, Kintzios S. Development of a portable, ultra-rapid and ultra-sensitive cell-based biosensor for the direct detection of the SARS-CoV-2 S1 spike protein antigen. Sensors. 2020;20(11):1-12.
- Koksaldi IC, Ahan RE, Kose S, Haciosmanoglu N, Kehribar ES, Gungen MA. SARS-CoV-2 detection with de novo designed synthetic riboregulators. MedRxiv. 2020:1-9.
- Giouroudi I, Georgios K. Recent advances in magnetic microfluidic biosensors. Nanom. 2017;7(7):171.
- Wang YW, Chen TY, Yang TH, Chang CC, Yang TL, Lo YH, Huang JJ. Thin-Film Transistor-based biosensors for determining stoichiometry of biochemical reactions. PLOS ONE. 2016; 11(12):1-8.
- Torabi R, Ranjbar R, Halaji M, Heiat M. Aptamers, the bivalent agents as probes and therapies for coronavirus infections: A systematic review. Mol Cell Probes. 2020; 53:1-9.
- Chatterjee TN, & Bandyopadhyay, RA. Molecularly imprinted polymer-based technology for rapid testing of COVID-19. Trans of the Indian Nat Acad of Engr. 2020; 5:225–228.
- Puoci F. "Monoclonal-type" plastic antibodies for COVID-19 treatment: What is the idea?. J Funct Biomater. 2020;11(2):1-4.
- Wang YF, Pan MM, Yu X, Xu L. The recent advances of fluorescent sensors based on molecularly imprinted fluorescent nanoparticles for pharmaceutical analysis. Curr Med Sci. 2020;40(3):407-421.