Published July 9, 2021
| Version NCBI blastn (v. 2.9.0+)
Dataset
Open
Rye600K SNP Array 'Lo7' Map
Authors/Creators
Description
Mapping position of rye600K SNP array markers developed by Bauer., et al. 2017, on the reference chromosomal-scale rye reference genome 'Lo7'. Shared in the hope that it provides a valuable and easily-accessible resource for further studies in rye genomics.
Method:
Positional data of 600K SNP markers was obtained by mapping each of the 600843 SNP marker sequences to the rye reference genome ‘Lo7’ using NCBI blastn (v. 2.9.0+) function. Mapping position of SNPs were hereafter stringently filtered for I) complete SNP sequence alignment, and II) maximum of 1 mismatch to ensure an accurate positioning.
Files
Files
(93.0 MB)
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md5:97f2dc3e6eff5dd08df970c9fc86ffde
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93.0 MB | Download |
Additional details
References
- Rabanus-Wallace, M. T., Hackauf, B., Mascher, M., Lux, T., Wicker, T., Gundlach, H., ... & Stein, N. (2021). Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature genetics, 53(4), 564-573.
- Bauer, E., Schmutzer, T., Barilar, I., Mascher, M., Gundlach, H., Martis, M. M., ... & Scholz, U. (2017). Towards a whole‐genome sequence for rye (Secale cereale L.). The Plant Journal, 89(5), 853-869.