Jul2021 reference datasets for Mitohelper

Reference datasets (Jul 2021 update) for Mitohelper (https://github.com/aomlomics/mitohelper)

Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline.

I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:

• mitofish.all.Jul2021.tsv (701,894 records)
• mitofish.12S.Jul2021.tsv (38,451 records)
• mitofish.COI.Jul2021.tsv (239,330 records)

II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:

• 12S-seqs-derep-uniq.qza 
• 12S-tax-derep-uniq.qza 
• 12S-16S-18S-seqs.qza 
• 12S-16S-18S-tax.qza 

If you use Mitohelper, please cite:
Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10.  https://doi.org/10.1002/edn3.187