Supplementary information for phylogenetic benchmarking study

This dataset comprises the following files:

- A tarball containing all alignments per run, used to infer phylogenies from (gzipped)

- A tarball containing all assemblies (where applicable) per run (gzipped)

- Several files with final results of the analyses. These can be read directly into SuperPlotsOfData to obtain the plots in our paper. RF = Robinson Foulds distance, KC = Kendall Colijn metric. L_0, L_0.5 and L_1 indicate lambda values of 0, 0.5 and 1 respectively in the calculation of the Kendall Colijn metric. full_data.csv contains all data. full_data_nomlst.csv contains all data, excluding the runs employing MLST alignment. run_differences_absolute.csv contains absolute differences between identical runs.