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Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1

Gorgolewski, Krzysztof J.; Esteban, Oscar; Burns, Christopher; Ziegler, Erik; Pinsard, Basile; Madison, Cindee; Waskom, Michael; Ellis, David Gage; Clark, Dav; Dayan, Michael; Manhães-Savio, Alexandre; Notter, Michael Philipp; Johnson, Hans; Dewey, Blake E; Halchenko, Yaroslav O.; Hamalainen, Carlo; Keshavan, Anisha; Clark, Daniel; Huntenburg, Julia M.; Hanke, Michael; Nichols, B. Nolan; Wassermann , Demian; Eshaghi, Arman; Markiewicz, Christopher; Varoquaux, Gael; Acland, Benjamin; Forbes, Jessica; Rokem, Ariel; Kong, Xiang-Zhen; Gramfort, Alexandre; Kleesiek, Jens; Schaefer, Alexander; Sikka, Sharad; Perez-Guevara, Martin Felipe; Glatard, Tristan; Iqbal, Shariq; Liu, Siqi; Welch, David; Sharp, Paul; Warner, Joshua; Kastman, Erik; Lampe, Leonie; Perkins, L. Nathan; Craddock, R. Cameron; Küttner, René; Bielievtsov, Dmytro; Geisler, Daniel; Gerhard, Stephan; Liem, Franziskus; Linkersdörfer, Janosch; Margulies, Daniel S.; Andberg, Sami Kristian; Stadler, Jörg; Steele, Christopher John; Broderick, William; Cooper, Gavin; Floren, Andrew; Huang, Lijie; Gonzalez, Ivan; McNamee, Daniel; Papadopoulos Orfanos, Dimitri; Pellman, John; Triplett, William; Ghosh, Satrajit

Release 0.12.0-rc1 (April 20, 2016)

  • ENH: Add nipype_crash_search command (https://github.com/nipy/nipype/pull/1422)
  • ENH: Created interface for BrainSuite Cortical Surface Extraction command line tools (https://github.com/nipy/nipype/pull/1305)
  • FIX: job execution on systems/approaches where locale is undefined (https://github.com/nipy/nipype/pull/1401)
  • FIX: Clean up byte/unicode issues using subprocess (https://github.com/nipy/nipype/pull/1394)
  • FIX: Prevent crash when tvtk is loaded - ETS_TOOLKIT=null (https://github.com/nipy/nipype/pull/973)
  • ENH: New interfaces in dipy: RESTORE, EstimateResponseSH, CSD and StreamlineTractography (https://github.com/nipy/nipype/pull/1090)
  • ENH: Added interfaces of AFNI (https://github.com/nipy/nipype/pull/1360, https://github.com/nipy/nipype/pull/1361, https://github.com/nipy/nipype/pull/1382)
  • ENH: Provides a Nipype wrapper for antsJointFusion (https://github.com/nipy/nipype/pull/1351)
  • ENH: Added support for PETPVC (https://github.com/nipy/nipype/pull/1335)
  • ENH: Merge S3DataSink into DataSink, added AWS documentation (https://github.com/nipy/nipype/pull/1316)
  • TST: Cache APT in CircleCI (https://github.com/nipy/nipype/pull/1333)
  • ENH: Add new flags to the BRAINSABC for new features (https://github.com/nipy/nipype/pull/1322)
  • ENH: Provides a Nipype wrapper for ANTs DenoiseImage (https://github.com/nipy/nipype/pull/1291)
  • FIX: Minor bugfix logging hash differences (https://github.com/nipy/nipype/pull/1298)
  • FIX: Use released Prov python library (https://github.com/nipy/nipype/pull/1279)
  • ENH: Support for Python 3 (https://github.com/nipy/nipype/pull/1221)
  • FIX: VTK version check missing when using tvtk (https://github.com/nipy/nipype/pull/1219)
  • ENH: Added an OAR scheduler plugin (https://github.com/nipy/nipype/pull/1259)
  • ENH: New ANTs interface: antsBrainExtraction (https://github.com/nipy/nipype/pull/1231)
  • API: Default model level for the bedpostx workflow has been set to "2" following FSL 5.0.9 lead
  • ENH: New interfaces for interacting with AWS S3: S3DataSink and S3DataGrabber (https://github.com/nipy/nipype/pull/1201)
  • ENH: Interfaces for MINC tools (https://github.com/nipy/nipype/pull/1304)
  • FIX: Use realpath to determine hard link source (https://github.com/nipy/nipype/pull/1388)
  • FIX: Correct linking/copying fallback behavior (https://github.com/nipy/nipype/pull/1391)
  • ENH: Nipype workflow and interfaces for FreeSurfer's recon-all (https://github.com/nipy/nipype/pull/1326)
  • FIX: Permit relative path for concatenated_file input to Concatenate() (https://github.com/nipy/nipype/pull/1411)
  • ENH: Makes ReconAll workflow backwards compatible with FreeSurfer 5.3.0 (https://github.com/nipy/nipype/pull/1434)

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