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Published April 21, 2016 | Version 0.12.0-rc1
Software Open

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1

  • 1. Department of Psychology, Stanford University
  • 2. Independent
  • 3. The University of Iowa
  • 4. UC Berkeley
  • 5. Mayo Clinic, Neurology, Rochester, MN, USA
  • 6. Klinikum rechts der Isar, TUM. ACPySS
  • 7. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
  • 8. University of Iowa
  • 9. Department of Electrical and Computer Engineering, Johns Hopkins University
  • 10. Dartmouth College: Hanover, NH, United States
  • 11. UC Berkeley - UCSF Graduate Program in Bioengineering
  • 12. Developer
  • 13. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 14. Otto-von-Guericke-University Magdeburg, Germany
  • 15. SRI International
  • 16. Athena EPI, Inria Sophia-Antipolis
  • 17. University College London
  • 18. Boston University
  • 19. INRIA
  • 20. Washington University in St Louis
  • 21. The University of Washington eScience Institute
  • 22. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
  • 23. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
  • 24. UniversityHospital Heidelberg, Germany
  • 25. National University Singapore
  • 26. Nathan s Kline institute for psychiatric research
  • 27. Neurospin/Unicog/Inserm/CEA
  • 28. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
  • 29. Duke University
  • 30. The University of Sydney
  • 31. University of illinois urbana champaign
  • 32. Mayo Clinic
  • 33. Harvard University - Psychology
  • 34. MPI CBS Leipzig, Germany
  • 35. Child Mind Institite
  • 36. Technische Universität Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry
  • 37. Institute of Neuroinformatics, ETH/University of Zurich
  • 38. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 39. German Institute for International Educational Research
  • 40. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 41. University of Helsinki
  • 42. Leibniz Institute for Neurobiology
  • 43. MPI-CBS; McGill University
  • 44. University of Newcastle, Australia
  • 45. The University of Texas at Austin
  • 46. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
  • 47. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
  • 48. University of Cambridge
  • 49. CEA
  • 50. Child Mind Institute / Nathan Kline Institute
  • 51. MIT, HMS

Description

Release 0.12.0-rc1 (April 20, 2016)

  • ENH: Add nipype_crash_search command (https://github.com/nipy/nipype/pull/1422)
  • ENH: Created interface for BrainSuite Cortical Surface Extraction command line tools (https://github.com/nipy/nipype/pull/1305)
  • FIX: job execution on systems/approaches where locale is undefined (https://github.com/nipy/nipype/pull/1401)
  • FIX: Clean up byte/unicode issues using subprocess (https://github.com/nipy/nipype/pull/1394)
  • FIX: Prevent crash when tvtk is loaded - ETS_TOOLKIT=null (https://github.com/nipy/nipype/pull/973)
  • ENH: New interfaces in dipy: RESTORE, EstimateResponseSH, CSD and StreamlineTractography (https://github.com/nipy/nipype/pull/1090)
  • ENH: Added interfaces of AFNI (https://github.com/nipy/nipype/pull/1360, https://github.com/nipy/nipype/pull/1361, https://github.com/nipy/nipype/pull/1382)
  • ENH: Provides a Nipype wrapper for antsJointFusion (https://github.com/nipy/nipype/pull/1351)
  • ENH: Added support for PETPVC (https://github.com/nipy/nipype/pull/1335)
  • ENH: Merge S3DataSink into DataSink, added AWS documentation (https://github.com/nipy/nipype/pull/1316)
  • TST: Cache APT in CircleCI (https://github.com/nipy/nipype/pull/1333)
  • ENH: Add new flags to the BRAINSABC for new features (https://github.com/nipy/nipype/pull/1322)
  • ENH: Provides a Nipype wrapper for ANTs DenoiseImage (https://github.com/nipy/nipype/pull/1291)
  • FIX: Minor bugfix logging hash differences (https://github.com/nipy/nipype/pull/1298)
  • FIX: Use released Prov python library (https://github.com/nipy/nipype/pull/1279)
  • ENH: Support for Python 3 (https://github.com/nipy/nipype/pull/1221)
  • FIX: VTK version check missing when using tvtk (https://github.com/nipy/nipype/pull/1219)
  • ENH: Added an OAR scheduler plugin (https://github.com/nipy/nipype/pull/1259)
  • ENH: New ANTs interface: antsBrainExtraction (https://github.com/nipy/nipype/pull/1231)
  • API: Default model level for the bedpostx workflow has been set to "2" following FSL 5.0.9 lead
  • ENH: New interfaces for interacting with AWS S3: S3DataSink and S3DataGrabber (https://github.com/nipy/nipype/pull/1201)
  • ENH: Interfaces for MINC tools (https://github.com/nipy/nipype/pull/1304)
  • FIX: Use realpath to determine hard link source (https://github.com/nipy/nipype/pull/1388)
  • FIX: Correct linking/copying fallback behavior (https://github.com/nipy/nipype/pull/1391)
  • ENH: Nipype workflow and interfaces for FreeSurfer's recon-all (https://github.com/nipy/nipype/pull/1326)
  • FIX: Permit relative path for concatenated_file input to Concatenate() (https://github.com/nipy/nipype/pull/1411)
  • ENH: Makes ReconAll workflow backwards compatible with FreeSurfer 5.3.0 (https://github.com/nipy/nipype/pull/1434)

Files

nipype-0.12.0-rc1.zip

Files (3.7 MB)

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