Published April 21, 2016
| Version 0.12.0-rc1
Software
Open
Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1
Authors/Creators
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Gorgolewski, Krzysztof J.1
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Esteban, Oscar1
- Burns, Christopher
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Ziegler, Erik2
- Pinsard, Basile
- Madison, Cindee
- Waskom, Michael1
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Ellis, David Gage3
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Clark, Dav4
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Dayan, Michael5
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Manhães-Savio, Alexandre6
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Notter, Michael Philipp7
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Johnson, Hans8
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Dewey, Blake E9
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Halchenko, Yaroslav O.10
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Hamalainen, Carlo
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Keshavan, Anisha11
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Clark, Daniel12
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Huntenburg, Julia M.13
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Hanke, Michael14
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Nichols, B. Nolan15
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Wassermann , Demian16
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Eshaghi, Arman17
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Markiewicz, Christopher18
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Varoquaux, Gael19
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Acland, Benjamin20
- Forbes, Jessica
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Rokem, Ariel21
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Kong, Xiang-Zhen22
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Gramfort, Alexandre23
- Kleesiek, Jens24
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Schaefer, Alexander25
- Sikka, Sharad26
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Perez-Guevara, Martin Felipe27
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Glatard, Tristan28
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Iqbal, Shariq29
- Liu, Siqi30
- Welch, David8
- Sharp, Paul31
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Warner, Joshua32
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Kastman, Erik33
- Lampe, Leonie34
- Perkins, L. Nathan18
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Craddock, R. Cameron35
- Küttner, René
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Bielievtsov, Dmytro
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Geisler, Daniel36
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Gerhard, Stephan37
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Liem, Franziskus38
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Linkersdörfer, Janosch39
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Margulies, Daniel S.40
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Andberg, Sami Kristian41
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Stadler, Jörg42
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Steele, Christopher John43
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Broderick, William29
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Cooper, Gavin44
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Floren, Andrew45
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Huang, Lijie46
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Gonzalez, Ivan47
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McNamee, Daniel48
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Papadopoulos Orfanos, Dimitri49
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Pellman, John50
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Triplett, William1
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Ghosh, Satrajit51
- 1. Department of Psychology, Stanford University
- 2. Independent
- 3. The University of Iowa
- 4. UC Berkeley
- 5. Mayo Clinic, Neurology, Rochester, MN, USA
- 6. Klinikum rechts der Isar, TUM. ACPySS
- 7. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
- 8. University of Iowa
- 9. Department of Electrical and Computer Engineering, Johns Hopkins University
- 10. Dartmouth College: Hanover, NH, United States
- 11. UC Berkeley - UCSF Graduate Program in Bioengineering
- 12. Developer
- 13. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 14. Otto-von-Guericke-University Magdeburg, Germany
- 15. SRI International
- 16. Athena EPI, Inria Sophia-Antipolis
- 17. University College London
- 18. Boston University
- 19. INRIA
- 20. Washington University in St Louis
- 21. The University of Washington eScience Institute
- 22. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
- 23. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
- 24. UniversityHospital Heidelberg, Germany
- 25. National University Singapore
- 26. Nathan s Kline institute for psychiatric research
- 27. Neurospin/Unicog/Inserm/CEA
- 28. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
- 29. Duke University
- 30. The University of Sydney
- 31. University of illinois urbana champaign
- 32. Mayo Clinic
- 33. Harvard University - Psychology
- 34. MPI CBS Leipzig, Germany
- 35. Child Mind Institite
- 36. Technische Universität Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry
- 37. Institute of Neuroinformatics, ETH/University of Zurich
- 38. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 39. German Institute for International Educational Research
- 40. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 41. University of Helsinki
- 42. Leibniz Institute for Neurobiology
- 43. MPI-CBS; McGill University
- 44. University of Newcastle, Australia
- 45. The University of Texas at Austin
- 46. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
- 47. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
- 48. University of Cambridge
- 49. CEA
- 50. Child Mind Institute / Nathan Kline Institute
- 51. MIT, HMS
Description
Release 0.12.0-rc1 (April 20, 2016)
- ENH: Add nipype_crash_search command (https://github.com/nipy/nipype/pull/1422)
- ENH: Created interface for BrainSuite Cortical Surface Extraction command line tools (https://github.com/nipy/nipype/pull/1305)
- FIX: job execution on systems/approaches where locale is undefined (https://github.com/nipy/nipype/pull/1401)
- FIX: Clean up byte/unicode issues using subprocess (https://github.com/nipy/nipype/pull/1394)
- FIX: Prevent crash when tvtk is loaded - ETS_TOOLKIT=null (https://github.com/nipy/nipype/pull/973)
- ENH: New interfaces in dipy: RESTORE, EstimateResponseSH, CSD and StreamlineTractography (https://github.com/nipy/nipype/pull/1090)
- ENH: Added interfaces of AFNI (https://github.com/nipy/nipype/pull/1360, https://github.com/nipy/nipype/pull/1361, https://github.com/nipy/nipype/pull/1382)
- ENH: Provides a Nipype wrapper for antsJointFusion (https://github.com/nipy/nipype/pull/1351)
- ENH: Added support for PETPVC (https://github.com/nipy/nipype/pull/1335)
- ENH: Merge S3DataSink into DataSink, added AWS documentation (https://github.com/nipy/nipype/pull/1316)
- TST: Cache APT in CircleCI (https://github.com/nipy/nipype/pull/1333)
- ENH: Add new flags to the BRAINSABC for new features (https://github.com/nipy/nipype/pull/1322)
- ENH: Provides a Nipype wrapper for ANTs DenoiseImage (https://github.com/nipy/nipype/pull/1291)
- FIX: Minor bugfix logging hash differences (https://github.com/nipy/nipype/pull/1298)
- FIX: Use released Prov python library (https://github.com/nipy/nipype/pull/1279)
- ENH: Support for Python 3 (https://github.com/nipy/nipype/pull/1221)
- FIX: VTK version check missing when using tvtk (https://github.com/nipy/nipype/pull/1219)
- ENH: Added an OAR scheduler plugin (https://github.com/nipy/nipype/pull/1259)
- ENH: New ANTs interface: antsBrainExtraction (https://github.com/nipy/nipype/pull/1231)
- API: Default model level for the bedpostx workflow has been set to "2" following FSL 5.0.9 lead
- ENH: New interfaces for interacting with AWS S3: S3DataSink and S3DataGrabber (https://github.com/nipy/nipype/pull/1201)
- ENH: Interfaces for MINC tools (https://github.com/nipy/nipype/pull/1304)
- FIX: Use realpath to determine hard link source (https://github.com/nipy/nipype/pull/1388)
- FIX: Correct linking/copying fallback behavior (https://github.com/nipy/nipype/pull/1391)
- ENH: Nipype workflow and interfaces for FreeSurfer's recon-all (https://github.com/nipy/nipype/pull/1326)
- FIX: Permit relative path for concatenated_file input to Concatenate() (https://github.com/nipy/nipype/pull/1411)
- ENH: Makes ReconAll workflow backwards compatible with FreeSurfer 5.3.0 (https://github.com/nipy/nipype/pull/1434)
Files
nipype-0.12.0-rc1.zip
Additional details
Related works
- Is new version of
- 10.3389/fninf.2011.00013 (DOI)
- Is supplement to
- https://github.com/nipy/nipype/tree/0.12.0-rc1 (URL)