Data from: Transposon proliferation in an asexual parasitoid

The widespread occurrence of sex is one of the most elusive problems in evolutionary biology. Theory predicts that asexual lineages can be driven to extinction by uncontrolled proliferation of vertically transmitted transposable elements (TEs), which accumulate because of the inefficiency of purifying selection in the absense of sex and recombination. To test this prediction, we compared genome-wide TE load between a sexual lineage of the parasitoid wasp Leptopilina clavipes and a lineage of the same species that is rendered asexual by Wolbachia-induced parthenogenesis. We sequenced the entire genomes of both the sexual and the asexual lineages using next-generation sequencing. We identified transposons of most major classes (including DNA transposons, LTR and LINE-like retrotransposable elements) in both lineages. Quantification of TE abundance using coverage depth showed that copy numbers in the asexual lineage exceeded those in the sexual lineage for DNA transposons, but not LTR and LINE-like elements. However, one or a small number of gypsy-like LTR elements exhibited a four-fold higher coverage in the asexual lineage. Quantitative PCR showed that high loads of this gypsy-like TE were characteristic for 11 genetically distinct asexual wasp lineages when compared to sexual lineages. Bisulfite sequencing revealed no DNA cytosine methylation of the gypsy-like TE in either lineage. We found no evidence for an overall increase in copy number for all TE types in asexuals as predicted by theory. Instead, we suggest that our results are best explained as side-effects of (epi)genetic manipulations of the host genome by Wolbachia. Asexuality is achieved in a myriad of ways in nature, many of which could create similar problems with TE proliferation.