Published May 2, 2022
| Version 1.0
Dataset
Open
DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data for benchmarking DCS tools.
Authors/Creators
- 1. Institute for Medical Biochemistry, University of Veterinary Medicine Vienna
Description
These data are the results from five independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 and 100:0 regulation scenarios.
Simulated data from DCSsim: simulated_ChIP-seq_data.zip
- Set1: TF 50:50
- Set2: TF 100:0
- Set3: Sharp mark 50:50
- Set4: Sharp mark 100:0
- Set5: Broad mark 50:50
- Set6: Broad mark 100:0
Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip
- Set1: Cebpa-ChIP-seq 50:50
- Set2: Cebpa-ChIP-seq 100:0
- Set3: H3K27ac-ChIP-seq 50:50
- Set4: H3K27ac-ChIP-seq 100:0
- Set5: H3K36me3-ChIP-seq 50:50
- Set6: H3K36me3-ChIP-seq 100:0
Files
simulated_ChIP-seq_data.zip
Additional details
References
- Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y