Published April 15, 2016 | Version v1
Dataset Restricted

Dataset for "Accurate automatic detection of densely distributed cell nuclei in 3D space", 1 of 2

Creators

  • 1. The University of Tokyo
  • 2. Kyushu Institute of Technology
  • 3. Kanazawa University
  • 4. Kyushu University
  • 5. Research Organization of Information and Systems

Description

Data and code associated with "Accurate automatic detection of densely distributed cell nuclei in 3D space" manuscript.

This upload contains the data and code used in the manuscript except for 4D image movie of Data2. The other part of the data will be published as another upload.

"Software" includes code and executable of the image analysis pipeline. "Data" includes microscopy images and grand truth used int the manuscript. The files in Data1.zip and Data1_aligned.zip are the part of the "Data" but were compressed separately because of file size limit. Please  decompress and locate them in appropriate directory according to the instruction in "Data".

 

Notes

MD5: f91973e0eae0040d8e968c470b3aaeeb data.zip 9f37b86da49f6fc09f54e1ea7d0e426d data1.zip 85fe0831ec4ef899da1231f182835344 data1_aligned.zip be669b7d3d09047f8b00bd0aed4e9216 software.zip

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.