Published June 15, 2021 | Version v0.1
Dataset Open

ATOM3D: RNA Structure Ranking (RSR) Dataset

Creators

  • 1. Stanford University
  • 2. University of Chicago

Description

RNA Structure Ranking (RSR) dataset from the ATOM3D project. This upload includes three zipped data directories:

  1. Full, unsplit dataset in LMDB format
  2. Split datasets, with each in LMDB format
  3. Text files containing train, validation, and test indices used to split raw dataset
  4. README containing dataset details

Files

README.md

Files (32.7 GB)

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md5:bb082061306cc1dc0afcd128f972d344
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md5:827ef44c7def126a6148a8b5ba6eae80
2.9 kB Preview Download
md5:bbe72c949dfc0cb5e80b06e2cdfbe207
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md5:68830ab0ab95cf3d218785a4e4e7669c
31.4 GB Download

Additional details

References

  • Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
  • Cruz, J. A., Blanchet, M. F., et al. (2012). RNA, 18(4), 610–625.
  • Watkins, A. M., Rangan, R., & Das, R. (2020). Structure, 28(8), 963-976.e6.