Dataset Open Access
ATOM3D: RNA Structure Ranking (RSR) Dataset
Townshend, Raphael J.L.;
Vögele, Martin;
Suriana, Patricia;
Derry, Alexander;
Powers, Alexander;
Laloudakis, Yianni;
Balachandar, Sidhika;
Anderson, Brandon;
Eismann, Stephan;
Kondor, Risi;
Altman, Russ B.;
Dror, Ron O.
RNA Structure Ranking (RSR) dataset from the ATOM3D project. This upload includes three zipped data directories:
- Full, unsplit dataset in LMDB format
- Split datasets, with each in LMDB format
- Text files containing train, validation, and test indices used to split raw dataset
- README containing dataset details
Files
(32.7 GB)
| Name | Size | |
|---|---|---|
|
LICENSE_SA
md5:bb082061306cc1dc0afcd128f972d344 |
20.1 kB | Download |
|
README.md
md5:827ef44c7def126a6148a8b5ba6eae80 |
2.9 kB | Download |
|
RSR-candidates-split-by-time-indices.tar.gz
md5:bbe72c949dfc0cb5e80b06e2cdfbe207 |
52.6 kB | Download |
|
RSR-candidates-split-by-time.tar.gz
md5:ba48438ec1df66c583a76cc42e5fddb5 |
1.3 GB | Download |
|
RSR-raw.tar.gz
md5:68830ab0ab95cf3d218785a4e4e7669c |
31.4 GB | Download |
Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
Cruz, J. A., Blanchet, M. F., et al. (2012). RNA, 18(4), 610–625.
Watkins, A. M., Rangan, R., & Das, R. (2020). Structure, 28(8), 963-976.e6.
207
301
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 207 | 207 |
| Downloads | 301 | 301 |
| Data volume | 3.9 TB | 3.9 TB |
| Unique views | 186 | 186 |
| Unique downloads | 158 | 158 |
Indexed in
- Publication date:
- June 15, 2021
- DOI:
-
- Keyword(s):
- RNA structure prediction structural biology machine learning
- License (for files):
- Other (Attribution)