Published June 9, 2021 | Version v0.1
Dataset Open

ATOM3D: Protein Structure Ranking (PSR) Dataset

Creators

  • 1. Stanford University
  • 2. University of Chicago

Description

Protein Structure Ranking (PSR) dataset from the ATOM3D project. This upload includes three zipped data directories:

  1. Full, unsplit dataset in LMDB format
  2. Split datasets, with each in LMDB format
  3. Text files containing train, validation, and test indices used to split raw dataset
  4. README containing dataset details

Files

README.md

Files (10.1 GB)

Name Size Download all
md5:80caef3c98febb70951fa244c8303039
8.1 GB Download
md5:bd7f3a498a4fdc47ae86b52d4dd34d73
103.8 kB Download
md5:8647b9d10d0a79dff81d1d83c825e74c
2.0 GB Download
md5:7067d84fa5888bab5b2bece3f9e13e2b
2.2 kB Preview Download

Additional details

References

  • Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
  • Kryshtafovych, A., Schwede, T., et al. (2019). Proteins: Structure, Function and Bioinformatics, 87(12), 1011-1020.