Dataset Open Access
ATOM3D: Protein Structure Ranking (PSR) Dataset
Townshend, Raphael J.L.;
Vögele, Martin;
Suriana, Patricia;
Derry, Alexander;
Powers, Alexander;
Laloudakis, Yianni;
Balachandar, Sidhika;
Anderson, Brandon;
Eismann, Stephan;
Kondor, Risi;
Altman, Russ B.;
Dror, Ron O.
Protein Structure Ranking (PSR) dataset from the ATOM3D project. This upload includes three zipped data directories:
- Full, unsplit dataset in LMDB format
- Split datasets, with each in LMDB format
- Text files containing train, validation, and test indices used to split raw dataset
- README containing dataset details
Files
(10.1 GB)
| Name | Size | |
|---|---|---|
|
PSR-raw.tar.gz
md5:80caef3c98febb70951fa244c8303039 |
8.1 GB | Download |
|
PSR-split-by-year-indices.tar.gz
md5:bd7f3a498a4fdc47ae86b52d4dd34d73 |
103.8 kB | Download |
|
PSR-split-by-year.tar.gz
md5:8647b9d10d0a79dff81d1d83c825e74c |
2.0 GB | Download |
|
README.md
md5:7067d84fa5888bab5b2bece3f9e13e2b |
2.2 kB | Download |
Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
Kryshtafovych, A., Schwede, T., et al. (2019). Proteins: Structure, Function and Bioinformatics, 87(12), 1011-1020.
307
614
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 307 | 307 |
| Downloads | 614 | 614 |
| Data volume | 2.8 TB | 2.8 TB |
| Unique views | 275 | 275 |
| Unique downloads | 350 | 350 |
Indexed in
- Publication date:
- June 9, 2021
- DOI:
-
- Keyword(s):
- Protein structure prediction protein model quality assessment structural biology machine learning
- License (for files):
- Creative Commons Attribution 4.0 International