Dataset Open Access

ATOM3D: Small Molecule Properties (SMP) Dataset

Townshend, Raphael J.L.; Vögele, Martin; Suriana, Patricia; Derry, Alexander; Powers, Alexander; Laloudakis, Yianni; Balachandar, Sidhika; Anderson, Brandon; Eismann, Stephan; Kondor, Risi; Altman, Russ B.; Dror, Ron O.

Small Molecule Properties (SMP) dataset from the ATOM3D project. This upload includes three zipped data directories:

  1. Full, unsplit dataset in LMDB format
  2. Split datasets, with each in LMDB format
  3. Text files containing train, validation, and test indices used to split raw dataset
  4. README containing dataset details
Files (397.9 MB)
Name Size
README.md
md5:6b9550e33305dda65af862725cc05d83
2.3 kB Download
SMP-random-indices.tar.gz
md5:e4ec8fef12a0856545ccc361d1c1860a
299.7 kB Download
SMP-random.tar.gz
md5:98c48d741bc70f44444ecc37d97580f4
201.2 MB Download
SMP-raw.tar.gz
md5:52cc7955c0f80f7dd9faf041e171f405
196.4 MB Download
  • Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.

  • Ramakrishnan, R., Dral, P. O., Rupp, M. & Von Lilienfeld, O. A. Quantum chemistry structures and properties of 134 kilo molecules. Scientific Data 1, (2014)

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