Published September 28, 2012 | Version v1

Cryptic species in Iphisa elegans Gray, 1851 (Squamata: Gymnophthalmidae) revealed by hemipenial morphology and molecular data

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Sales Nunes, Pedro M., Fouquet, Antoine, Curcio, Felipe F., Kok, Philippe J. R., Rodrigues, Miguel Trefaut (2012): Cryptic species in Iphisa elegans Gray, 1851 (Squamata: Gymnophthalmidae) revealed by hemipenial morphology and molecular data. Zoological Journal of the Linnean Society 166 (2): 361-376, DOI: 10.1111/j.1096-3642.2012.00846.x, URL: http://dx.doi.org/10.1111/j.1096-3642.2012.00846.x

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urn:lsid:plazi.org:pub:FF8EFFF3FFEDFFF97B68FF8F0973FFD5

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Figure: 10.5281/zenodo.4890404 (DOI)
Figure: 10.5281/zenodo.4890406 (DOI)
Figure: 10.5281/zenodo.4890408 (DOI)

References

  • Akaike H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716- 723.
  • Amezquita A, Lima AP, Jehle R, Castellanos L, Ramos O, Crawford AJ, Gasser H, Hodl W. 2009. Calls, colours, shapes, and genes: a multi-trait approach to the study of geographic variation in the Amazonian frog, Allobates femoralis. Biological Journal of the Linnean Society 98: 826-838.
  • Antonelli A, Quijada-Mascarenas A, Crawford AJ, Bates AJ, Velazco JM, Wuster W. 2010. Molecular studies and phylogeography of Amazonian tetrapods and
  • Arnold EN. 1986a. Why copulatory organs provide so many useful taxonomic characters: the origin and maintenance of
  • Arnold EN. 1986b. The hemipenis of lacertid lizards (Reptilia: Lacertidae): structure, variation and systematic implications. Journal of Natural History 20: 1221-1257.
  • Avila-Pires TCS. 1995. Lizards of Brazilian Amazonia (Reptilia: Squamata). Zoologische Verhandelingen (Leiden) 299: 1-706.
  • Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, Winker K, Ingram KK, Das I. 2007. Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution (Personal Edition) 22: 148-155.
  • Bickham JW, Wood CC, Patton JC. 1995. Biogeographic implications of cytochrome b sequences and allozymes in sockeye (Oncorhynchus nerka). The Journal of Heredity 86: 140-144.
  • Bush MB. 1994. Amazonian speciation - a necessarily complex model. Journal of Biogeography 21: 5-17.
  • Butlin RK. 1987. Speciation by reinforcement. Trends in Ecology & Evolution (Personal Edition) 2: 8-13.
  • Butlin RK. 1995. Reinforcement: an idea evolving. Trends in Ecology & Evolution (Personal Edition) 10: 432-434.
  • Butlin RK. 2004. Mystery of mysteries no longer? Evolution 58: 243-245.
  • Chek AA, Lougheed SC, Bogart JP, Boag PT. 2001. Perception and history: molecular phylogeny of a diverse group of neotropical frogs, the 30-chromosome Hyla (Anura: Hylidae). Molecular Phylogenetics and Evolution 18: 370- 385.
  • Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1659.
  • Cole CJ, Hardy LM. 1981. Systematics of North American colubrid snakes related to Tantilla planiceps (Blainville). Bulletin of the American Museum of Natural History 171: 201-284.
  • Dayrat B. 2005. Toward integrative taxonomy. Biological Journal of the Linnean Society 85: 407-415.
  • DeSalle R, Egan MG, Siddal M. 2005. The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philosophical Transactions of the Royal Society B 360: 1905- 1916.
  • Dixon JR. 1974. Systematic review of the microteiid genus Iphisa. Herpetologica 30: 133-139.
  • Dobzhansky T. 1940. Speciation as a stage in evolutionary divergence. American Naturalist 74: 312-321.
  • Dobzhansky T. 1951. Genetics and the origin of species, 3rd edn. New York: Columbia University Press.
  • Dowling HG. 1967. Hemipenes and other characters in colubrid classification. Herpetologica 23: 138-142.
  • Dowling HG, Savage JM. 1960. A guide to the snake hemipenis: a survey of basic structure and systematic characteristics. Zoologica 45: 17-28.
  • Efron B. 1979. 1977 Rietz Lecture-bootstrap methods- another look at the jackknife. Annals of Statistics 7: 1-26.
  • Elmer KR, Davila JA, Lougheed SC. 2007. Cryptic diversity and deep divergence in an upper Amazonian leaflitter frog, Eleutherodactylus ockendeni. BMC Evolutionary Biology 7: 1-14.
  • Felsenstein J. 1985. Confidence limits on phylogenies - an approach using the bootstrap. Evolution 39: 783-791.
  • Fouquet A, Gilles A, Vences M, Marty C, Blanc M, Gemmell NJ. 2007. Underestimation of species richness in Neotropical frogs revealed by mtDNA analyses. Plos ONE 2: 1-10.
  • Funk WC, Caminer M, Ron SR. 2012. High levels of cryptic species diversity uncovered in Amazonian frogs. Proceedings of the Royal Society B: Biological Sciences 279: 1806-1814.
  • Gamble T, Daza JD, Colli GR, Vitt LJ, Bauer AM. 2011. A new genus of miniaturized and pug-nosed gecko from South America (Sphaerodactylidae: Gekkota). Zoological Journal of the Linnean Society 163: 1244-1266.
  • Gaston KJ, Williams PH. 1996. Spatial patterns in taxonomic diversity. In: Gaston KJ, ed. Biodiversity: a biology of numbers and difference. Oxford: Blackwell Science, 202- 229.
  • Geurgas SR, Rodrigues MT. 2010. The hidden diversity of Coleodactylus amazonicus (Sphaerodactylinae, Gekkota) revealed by molecular data. Molecular Phylogenetics and Evolution 54: 583-593.
  • Godinho R, Domingues V, Crespo EG, Ferrand N. 2006. Extensive intraspecific polymorphism detected by SSCP at the nuclear Cmos gene in the endemic Iberian lizard Lacerta schreiberi. Molecular Ecology 15: 731-738.
  • Gray JE. 1851. Description of a new genus and family of cyclosaurian lizards, from Para. Proceedings of Zoological Society of London 19: 38-39.
  • Harvey MB, Embert D. 2008. Review of Bolivian Dipsas (Serpentes: Colubridae), with comments on other South American species. Herpetological Monographs 22: 54-105.
  • Hekkala E, Shirley MH, Amato G, Austin JD, Charter S, Thorbjanarson J, Vliet KA, Houck ML, DeSalle R, Blum MJ. 2011. An ancient icon reveals new mysteries: mummy DNA resurrects a cryptic species within the Nile crocodile. Molecular Ecology 20: 4199-4215.
  • Hillis DM, Bull JJ. 1993. An empirical-test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
  • Hillis DM, Wiens JJ. 2000. Molecules versus morphology in systematics: conflicts, artifacts and misconceptions. In: Wiens JJ, ed. Phylogenetic analysis of morphological data. Washington, DC: Smithsonian Institution Press, 1-20.
  • Hoogmoed MS. 1973. Notes on the herpetofauna of Surinam IV. The lizards and amphisbaenians of Surinam. Biogeographica 4: i-ix + 1-419.
  • Hoorn C, Wesselingh FP, ter Steege H, Bermudez MA, Mora A, Sevink J, Sanmatin I, Sanchez-Meseguer A, Anderson CL, Figueiredo JP, Jaramillo C, Riff D, Negri FR, Hooghiemstra H, Lundberg J, Stadler T, Sarkinken T, Antonelli A. 2010. Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity. Science 330: 927-931.
  • Hoskin CJ, Higgie M, Mcdonald KR, Moritz C. 2005. Reinforcement drives rapid allopatric speciation. Nature 437: 1353-1356.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian
  • Inger RF, Marx H. 1962. Variation of hemipenis and cloacain the colubrid snake Calamaria lumbricoidea. Systematic Zoology 11: 32-38.
  • Keogh S. 1999. Evolutionary implications of hemipenial morphology in the terrestrial Australian elapid snakes. Zoological Journal of the Linnean Society 125: 239-278.
  • Koch A, Arida E, Schmitz A, Bohme W, Ziegler T. 2009. Refining the polytypic species concept of mangrove monitors (Squamata: Varanus indicus group): a new cryptic species from the Talaud Islands, Indonesia, reveals the underestimated diversity of Indo-Australian monitor lizards. Australian Journal of Zoology 57: 29.
  • Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. 1989. Dynamics of mitochondrial DNA evolution in animals - amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America 86: 6196-6200.
  • Lemmon EM. 2009. Diversification of conspecific signals in sympatry: geographic overlap drives multidimensional reproductive character displacement in frogs. Evolution 63: 1155-1170.
  • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
  • Liou LW, Price TD. 1994. Speciation by reinforcement of premating isolation. Evolution 48: 1451-1459.
  • Manzani PR, Abe AS. 1988. Sobre dois novos metodos de preparo do hemipenis de serpentes. Memorias do Instituto Butantan (Sao Paulo) 50: 15-20.
  • McDowell SB. 1979. A catalogue of the snakes of New Guinea and the Solomons, with special reference to those in the Bernice P. Bishop Museum. III. Boinae and Acrochordoidea (Reptilia; Serpentes). Journal of Herpetology 13: 1-92.
  • Meyer A. 1993. Phylogenetic relationships and evolutionary processes in East African cichlid fishes. Trends in Ecology and Evolution 8: 279-284.
  • Miralles A, Vasconcelos R, Pereira A, Harris DJ, Carranza S. 2010. An integrative taxonomic revision of the Cape Verdean skinks (Squamata, Scincidae). Zoologica Scripta 40: 16-44.
  • Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Nielsen SCA, Rasmussen M, Willerslev E, Gilbert MTP, Harkins T. 2011. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Research 20: 908-916.
  • Mott T, Vieites DR. 2009. Molecular phylogenetics reveals extreme morphological homoplasy in Brazilian worm lizards challenging current taxonomy. Molecular Phylogenetics and Evolution 51: 190-200.
  • Myers CW. 1974. The systematics of Rhadinaea (Colubridae), a genus of New World snakes. Bulletin of the American Museum of Natural History 153: 1-262.
  • Myers CW, Rivas Fuenmayor G, Jadin RC. 2009. New species of lizards from Auyantepui and La Escalera in the Venezuelan Guayana, with notes on 'microteiid' hemipenes (Squamata: Gymnophthalmidae). American Museum Novitates 3660: 1-31.
  • Myers N, Mittermeier RA, Mittermeier CG, Da Fonseca GAB, Kent J. 2000. Biodiversity hotspots for conservation priorities. Nature 403: 853-858.
  • Noonan BP, Wray KP. 2006. Neotropical diversification: the effects of a complex history on diversity within the poison frog genus Dendrobates. Journal of Biogeography 33: 1007-1020.
  • Nunes PMS. 2011. Morfologia hemipeniana dos lagartos microteideos e suas implicacoes nas relacoes filogeneticas da familia Gymnophthalmidae (Squamata: Teiioidea) - Volume 1 (Text). Unpublished D. Phil. Thesis, Universidade de Sao Paulo.
  • Nylander JA. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
  • Oliver PM, Adams M, Doughty P. 2010. Molecular evidence for ten species and Oligo-Miocene vicariance within a nominal Australian gecko species (Crenadactylus ocellatus, Diplodactylidae). BMC Evolutionary Biology 10: 1-11.
  • Padial JM, Miralles A, de la Riva I, Vences M. 2010. The integrative future of taxonomy. Frontiers in Zoology 7: 1-14.
  • Pesantes OS. 1994. A method for preparing the hemipenis of preserved snakes. Journal of Herpetology 28: 93-95.
  • Peters JA, Donoso-Barros R. 1986. Catalogue of the Neotropical Squamata: Part II. Lizards and amphisbaenians. Revised edition. Washington, DC: Smithsonian Institution Press.
  • Pfenninger M, Schwenk K. 2007. Cryptic animal species are homogeneously distributed among taxa and biogeographical regions. BMC Evolutionary Biology 7: 21.
  • Pope CH. 1941. Copulatory adjustment in snakes. Field Museum of Natural History, Zoology. Series 24: 249-252.
  • Presch W. 1978. Descriptions of the hemipenial morphology in eight species of microteiid lizards (Family Teiidae, Subfamily Gymnophthalminae). Herpetologica 34: 108-112.
  • Prudente ALC, Passos P. 2010. New cryptic species of Atractus (Serpentes: Dipsadidae) from Brazilian Amazonia. Copeia 2010: 397-404.
  • de Queiroz K. 1998. The general lineage concept of species, species criteria, and the process of speciation. In: Howard DJ, Berlocher SH, eds. Endless forms: species and speciation. Oxford: Oxford University Press, 57-75.
  • Rambaut A, Drummond A. 2003. Tracer, version 1.2. Available at: http://tree.bio.ed.ac.uk/software/tracer/
  • Rodrigues MT, Cassimiro J, Pavan D, Curcio FF, Verdade VK, Pellegrino KC. 2009. A new genus of microteiid lizard from the Caparao Mountains, southeastern Brazil, with a discussion of relationships among Gymnophthalminae (Squamata). American Museum Novitates 3673: 1-27.
  • Saint KM, Austin CC, Donnellan SC, Hutchinson MN. 1998. C-mos, a nuclear marker useful for squamate phylogenetic analysis. Molecular Phylogenetics and Evolution 10: 259-263.
  • Servedio MR, Noor MAF. 2003. The role of reinforcement in speciation: theory and data. Annual Review of Ecology, Evolution, and Systematics 34: 339-364.
  • Stephens M, Donnelly P. 2003. A comparison of Bayesian methods for haplotype reconstruction. American Journal of Human Genetics 73: 1162-1169.
  • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics 68: 978-989.
  • Swofford DL. 1993. PAUP - a computer-program for phylogenetic inference using maximum parsimony. The Journal of General Physiology 102: 9A.
  • Trontelj P, Fiser C. 2009. Cryptic species diversity should not be trivialised. Systematics and Biodiversity 7: 1-3.
  • Uzzell T. 1966. Teiid lizards of the genus Neusticurus (Reptilia, Sauria). Bulletin of the American Museum of Natural History 132: 277-328.
  • Uzzell T. 1973. A revision of lizards of the genus Prionodactylus, with a new genus for P. leucostictus and notes on the genus Euspondylus (Sauria, Teiidae). Postilla 159: 1-67.
  • Vogel G. 2001. African elephant species splits in two. Science 293: 1414.
  • Wake DB, Jockusch EL. 2000. Detecting species borders
  • Wilson EO. 1992. The diversity of life. Cambridge, MA: Belknap Press of Harvard University Press.
  • Wu H-C, Lin R-C, Hung H-Y, Yeh C-F, Chu J-H, Yang X-J, Yao C-J, Zou F-S, Yao C-T, Li S-H, Lei F-M. 2011. Molecular and morphological evidences reveal a cryptic species in the vinaceous rosefinch Carpodacus vinaceus (Fringillidae; Aves). Zoologica Scripta 40: 468-478.
  • Zaher H. 1999. Hemipenial morphology of the South American xenodontine snakes, with a proposal for a monophyletic Xenodontinae and a reappraisal of colubroid hemipenes. Bulletin of the American Museum of Natural History 240: 1-168.
  • Zaher H, Prudente ALC. 1999. Intraspecific variation of the hemipenis in Siphlophis and Tripanurgos. Journal of Herpetology 33: 698-702.