Software Open Access

dhimmel/pathways v2.0: Compiling human pathway gene sets

Daniel S. Himmelstein; Alexander R. Pico

This release compiles 1,862 pathway gene sets (1,341 from Reactome, 298 from WikiPathways, and 223 from the PID). Reactome and the PID were retrieved via Pathway Commons v7. Compared to the previous release (dhimmel/pathways v1.1), this release removes MSigDB pathways due to licensing issues.

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