Software Open Access

dhimmel/pathways v2.0: Compiling human pathway gene sets

Daniel S. Himmelstein; Alexander R. Pico

This release compiles 1,862 pathway gene sets (1,341 from Reactome, 298 from WikiPathways, and 223 from the PID). Reactome and the PID were retrieved via Pathway Commons v7. Compared to the previous release (dhimmel/pathways v1.1), this release removes MSigDB pathways due to licensing issues.

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Publication date:
April 2, 2016
DOI:
10.5281/zenodo.48810

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10.5281/zenodo.48810

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Keyword(s):
pathways gene set WikiPathways Reactome PID Rephetio
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Versions

Version v2.0 10.5281/zenodo.48810 Apr 2, 2016
Version v1.1 10.5281/zenodo.45588 Feb 5, 2016
Version v1.0 10.5281/zenodo.31834 Oct 5, 2015
Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.593860. This DOI represents all versions, and will always resolve to the latest one. Read more.

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