Published May 29, 2021 | Version october_2019

drugcomb_oct2019_withdoses

Authors/Creators

  • 1. University of Helsinki

Description

Columns are:

"block_id"|"drug_row"|"drug_col"|"drug_row_cid"|"drug_col_cid"|"conc_r"|"conc_c"|"inhibition"|"synergy_zip"|"synergy_bliss"|"synergy_loewe"|"synergy_hsa"|"cell_line_name"|"css_ri". 

* block_id refers to one experiment, that is testing two drugs in different doses in a single cell line. Biological replicates have different block_ids

* drug_row and drug_col are commonly used drug names

* drug_row_cid and drug_col_cid are CID drug identifiers

* conc_c and conc_r are drug doses in uM

* inhibition refers to percent growth inhibition as measured using a CTG cell viability assay (in most cases)

* four synergy scores are calculated using distinct four null models. For further info please refer to Zagidullin 2019 in Nucleic Acids Research 

* CSS_RI is a combination sensitivity score, for more info refer to Malyutina 2019 in PLoS computational biology

 

Files

doses_CssSyn2020_1.csv

Files (2.2 GB)

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Additional details

Related works

Is derived from
Journal article: 10.1093/nar/gkz337 (DOI)
Is referenced by
Preprint: 10.1101/2021.04.16.439299 (DOI)

References

  • Zagidullin B, Aldahdooh J, Zheng S, et al. DrugComb: an integrative cancer drug combination data portal. Nucleic Acids Res. 2019; 47:W43–W51