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Dataset Open Access

DIPS-Plus: The Enhanced Database of Interacting Protein Structures for Interface Prediction

Alex Morehead; Chen Chen; Ada Sedova; Jianlin Cheng

This dataset contains replication data for the paper titled "DIPS-Plus: The Enhanced Database of Interacting Protein Structures for Interface Prediction". The dataset consists of pickled Pandas DataFrame files that can be used to train and validate protein interface prediction models. This dataset also contains the externally generated residue-level PSAIA and HH-suite3 features for users' convenience (e.g. raw MSAs and profile HMMs for each protein complex). Our GitHub repository linked in the "Additional notes" metadata section below provides more details on how we parsed through these files to create training and validation datasets. The GitHub repository for DIPS-Plus also includes scripts that can be used to impute missing feature values and convert the final "raw" complexes into DGL-compatible graph objects.

This dataset can be updated periodically using the instructions contained in our GitHub repository for DIPS-Plus (https://github.com/amorehead/DIPS-Plus). For data provenance, the complexes curated for DIPS-Plus originate from the RCSB's bound protein complex repository (https://ftp.wwpdb.org/pub/pdb/data/biounit/coordinates/divided/).
Files (44.6 GB)
Name Size
final_raw_db5.tar.gz
md5:eba04682c64fae66938742e282960e38
42.8 MB Download
final_raw_dips.tar.gz
md5:6ed737072d0f075f036751ff7a2d0d27
7.7 GB Download
interim_complexes_db5.tar.gz
md5:a61aea4af023abd17b6ddd19863c0ffc
6.4 kB Download
interim_complexes_dips.tar.gz
md5:cb1283cf1fb91a586d786a8e2c53053c
2.3 MB Download
interim_external_feats_db5.tar.gz
md5:893fa1d932bbb0738f093ba634155d09
291.8 MB Download
interim_external_feats_dips.tar.gz.partaa
md5:04088a0afca2107c0418868bb4380fb0
4.3 GB Download
interim_external_feats_dips.tar.gz.partab
md5:f7f14525ea07aabbadc52af25917e82b
4.3 GB Download
interim_external_feats_dips.tar.gz.partac
md5:afe62360640af90b4fc52c4044c84b4c
4.3 GB Download
interim_external_feats_dips.tar.gz.partad
md5:f132e558ebebf2d2d2a0765022d4c3f3
4.3 GB Download
interim_external_feats_dips.tar.gz.partae
md5:259ceccd4e2397e17712606f5e43f3e0
4.3 GB Download
interim_external_feats_dips.tar.gz.partaf
md5:a4d8493d22652781225a3af3ef2ae724
4.3 GB Download
interim_external_feats_dips.tar.gz.partag
md5:0547b5b72b3912c22f6036f843a05f2a
4.3 GB Download
interim_external_feats_dips.tar.gz.partah
md5:072be5754b4c27241e761878a42647dd
3.7 GB Download
interim_pairs_db5.tar.gz
md5:fd17825eafd0bee22daddf1475336929
15.4 MB Download
interim_pairs_pruned_dips.tar.gz
md5:2925bba15a1f04b70f437fde982e4717
2.8 GB Download
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