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Published May 22, 2021 | Version v0.1
Software Open

HuffordLab/NAM-genomes: publication.prerelease

Creators

  • 1. Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011
  • 2. Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011; Genome Informatics Facility, Iowa State University, Ames, IA 50011
  • 3. USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011
  • 4. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724
  • 5. Department of Genetics, University of Georgia, Athens, GA 30602
  • 6. Department of Plant Biology, University of Georgia, Athens, GA 30602
  • 7. Department of Agronomy, Iowa State University, Ames, IA 50011
  • 8. 4Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724
  • 9. Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108
  • 10. Center for Population Biology, University of California, Davis, CA 95616; Department of Evolution and Ecology, University of California, Davis, CA 95616
  • 11. Institute of Bioinformatics, University of Georgia, Athens, GA 30602
  • 12. Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108; 12Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN 55108
  • 13. Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720
  • 14. Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011; Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, IA, 50010
  • 15. Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721
  • 16. Corteva Agriscience, Johnston, IA 50131
  • 17. Center for Population Biology, University of California, Davis, CA 95616; Department of Evolution and Ecology, University of California, Davis, CA 95616; Genome Center, University of California, Davis, CA 95616
  • 18. 4Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853
  • 19. Department of Genetics, University of Georgia, Athens, GA 30602; Department of Plant Biology, University of Georgia, Athens, GA 30602; Institute of Bioinformatics, University of Georgia, Athens, GA 30602

Description

Detailed bioinformatics scripts and methods used in the NAM genome paper.

Files

HuffordLab/NAM-genomes-v0.1.zip

Files (99.7 MB)

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md5:ce3f5a53061f5861d54afdd32526b7bc
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Additional details

Related works

Is supplement to
Annotation collection: https://github.com/HuffordLab/NAM-genomes/tree/v0.1 (URL)

Funding

RESEARCH-PGR: PanAnd - Harnessing convergence and constraint to predict adaptations to abiotic stress for maize and sorghum 1822330
National Science Foundation
TRANSFORM-PGR: Whole genome assembly of the maize NAM founders 1744001
National Science Foundation
MRI: Acquisition of a HPC System: Computing for Sustainability 1726447
National Science Foundation
IPGA: Gramene - Exploring Function through Comparative Genomics and Network Analysis 1127112
National Science Foundation