Published May 22, 2021
| Version v0.1
Software
Open
HuffordLab/NAM-genomes: publication.prerelease
Authors/Creators
- Matthew B. Hufford1
- Arun S. Seetharam2
- Margaret R. Woodhouse3
- Kapeel M. Chougule4
- Shujun Ou1
- Jianing Liu5
- William A. Ricci6
- Tingting Guo7
- Andrew Olson8
- Yinjie Qiu9
- Rafael Della Coletta9
- Silas Tittes10
- Asher I. Hudson10
- Alexandre P. Marand5
- Sharon Wei8
- Zhenyuan Lu8
- Bo Wang8
- Marcela K. Tello-Ruiz8
- Rebecca D. Piri11
- Na Wang6
- Dong won Kim6
- Yibing Zeng5
- Christine H. O'Connor12
- Xianran Li7
- Amanda M. Gilbert9
- Erin Baggs13
- Ksenia V. Krasileva13
- John L. Portwood II3
- Ethalinda K.S. Cannon3
- Carson M. Andorf3
- Nancy Manchanda1
- Samantha J. Snodgrass1
- David E. Hufnagel14
- Qiuhan Jiang1
- Sarah Pedersen1
- Michael L. Syring1
- David A. Kudrna15
- Victor Llaca16
- Kevin Fengler16
- Robert J. Schmitz5
- Jeffrey Ross-Ibarra17
- Jianming Yu7
- Jonathan I. Gent6
- Candice N. Hirsch9
- Doreen Ware18
- R. Kelly Dawe19
- 1. Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011
- 2. Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011; Genome Informatics Facility, Iowa State University, Ames, IA 50011
- 3. USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011
- 4. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724
- 5. Department of Genetics, University of Georgia, Athens, GA 30602
- 6. Department of Plant Biology, University of Georgia, Athens, GA 30602
- 7. Department of Agronomy, Iowa State University, Ames, IA 50011
- 8. 4Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724
- 9. Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108
- 10. Center for Population Biology, University of California, Davis, CA 95616; Department of Evolution and Ecology, University of California, Davis, CA 95616
- 11. Institute of Bioinformatics, University of Georgia, Athens, GA 30602
- 12. Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108; 12Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN 55108
- 13. Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720
- 14. Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011; Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, IA, 50010
- 15. Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721
- 16. Corteva Agriscience, Johnston, IA 50131
- 17. Center for Population Biology, University of California, Davis, CA 95616; Department of Evolution and Ecology, University of California, Davis, CA 95616; Genome Center, University of California, Davis, CA 95616
- 18. 4Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853
- 19. Department of Genetics, University of Georgia, Athens, GA 30602; Department of Plant Biology, University of Georgia, Athens, GA 30602; Institute of Bioinformatics, University of Georgia, Athens, GA 30602
Description
Detailed bioinformatics scripts and methods used in the NAM genome paper.
Files
HuffordLab/NAM-genomes-v0.1.zip
Files
(99.7 MB)
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Additional details
Related works
- Is supplement to
- Annotation collection: https://github.com/HuffordLab/NAM-genomes/tree/v0.1 (URL)
Funding
- U.S. National Science Foundation
- RESEARCH-PGR: PanAnd - Harnessing convergence and constraint to predict adaptations to abiotic stress for maize and sorghum 1822330
- U.S. National Science Foundation
- TRANSFORM-PGR: Whole genome assembly of the maize NAM founders 1744001
- U.S. National Science Foundation
- MRI: Acquisition of a HPC System: Computing for Sustainability 1726447
- U.S. National Science Foundation
- IPGA: Gramene - Exploring Function through Comparative Genomics and Network Analysis 1127112