Published May 4, 2017
| Version v2.1.0-mtReads
Dataset
Open
Supplementary information - Assembling Genomes With Complex Genomic Repeats
Contributors
Researcher (3):
- 1. Centre d'Immunologie de Marseille-Luminy, Aix Marseille Univ, CNRS, INSERM, 13288 Marseille, France
- 2. Malaghan Institute of Medical Research
Description
Update (v2.1.0-mtReads) - Added combined fast5 files for mtDNA run D/132397, and reference mitochondrial genome:
- reads_all_D_132397.fast5
- circ-Nb-ec3-mtDNA.fasta
Update (v2.0.0-mtReads) - Added mitochondrial sequence raw read files (as split and combined fast5 files), and summary statistics (gap-compressed identity, and mean estimated basecaller accuracy):
- Nbra_CFED_mtDNA_reads.tar
- gci_graph.zip
These data complement the poster and lightning talk to be given by David Eccles at the London Calling conference in 2017:
- MIMR_EC3_ONTDECAF_t1.fasta.gz -- initial attempt at a genome assembly with Canu v1.4 (3x error corrected)
- NbL5_ONTDECAF_t1.contigs.flipped.gfa -- assembly graph associated with the corrected genome
- tangled_web_300.png -- background image of the poster (generated from the Canu GFA)
Files
gci_graph.zip
Files
(1.3 GB)
| Name | Size | |
|---|---|---|
|
md5:e37cc0fd17065811dfa24f5ddbca8224
|
13.4 kB | Download |
|
md5:883bcfc441ac10faa1468ae5bd440f96
|
10.3 MB | Preview Download |
|
md5:0ab6efcbdfdc8d23d9f98fee14930e20
|
92.4 MB | Download |
|
md5:d37c97eccf8a1ae51958e8af267bf3c4
|
178.4 kB | Download |
|
md5:2f136d070aa55458ff0cd1dc02a4a842
|
866.0 MB | Download |
|
md5:a6f08196873303f9979372ce91ba46c9
|
347.0 MB | Download |
|
md5:1579f158edd196233d2c73b7e0fa057f
|
3.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Journal article: 10.1186/s12915-017-0473-4 (DOI)
- Is supplemented by
- Dataset: https://www.ebi.ac.uk/ena/browser/view/PRJNA328296 (URL)