Published May 21, 2021 | Version v1

Bulk annotation workflow with omero.forms

Authors/Creators

  • 1. Max Planck Institute for Evolutionary Biology

Description

In this video we present how users of the Omero Image Database (https://www.openmicroscopy.org/) can import additional metadata from a spreadsheet (e.g. during a microscopy session) and attach the information as key-value pairs (MapAnnotation) to the corresponding image. Our workflow combines the "omero-forms" plugin (https://pypi.org/project/omero-forms/) with the "Omero Bulk Annotation Tools" script collection from https://github.com/mpievolbio-scicomp/obat.

This video is a "flash talk" contribution for the OME Community Meeting 2021.

Files

Files (4.5 MB)

Name Size
md5:b6d9c1c5de1970dc11ecdb1c72fb878b
4.5 MB Download

Additional details

Related works

Is identical to
Video/Audio: https://youtu.be/inGQXtbzoZI (URL)