Published December 19, 2023 | Version 2.0.0
Software Open

nf-core/metaboigniter: nf-core/metaboigniter v2.0.0 - Purple Violet

Creators

  • 1. @NBISweden
  • 2. @seqeralabs
  • 3. @seqeralabs | Stockholm
  • 4. @BiGCAT-UM
  • 5. Robert Bosch GmbH

Description

This marks the release of Version 2.0.0 of our pipeline with the introduction of DSL 2 in nf-core/metaboigniter. This latest version brings an array of major updates and enhancements:

  • Enhanced Input Handling: CSV file input format
  • Quantification and Identification Features: We have added mapAlignerPoseClustering, featureLinkerUnlabeledkd, MetaboliteAdductDecharger, and MS2Query.
  • Resolved Bugs: We've addressed and fixed issues related to SIRIUS APIs
  • Performance: Parallel linking and identification

Deprecated Features: We have deprecated several features from version 1.0.1. These include XCMS, IPO, MetFrag, CFMID, and Internal library search.

A huge thanks to @axelwalter and @maxulysse for helping with this release.

Files

nf-core/metaboigniter-2.0.0.zip

Files (3.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/metaboigniter/tree/2.0.0 (URL)