SHSY5Y_differentiation_datafiles

SHSY5Y_differentiation_datafiles is a directory of data accompanying the manuscript:

Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes

David J Wright¹, Nicola Hall^2,3, Naomi Irish¹, Angela L Man¹, Will Glynn¹, Arne Mould^2,3, Alejandro De Los Angeles^2,3, Emily Angiolini¹, David Swarbreck¹, Karim Gharbi¹, Elizabeth M Tunbridge^2,3, Wilfried Haerty¹* 

¹Earlham Institute, Norwich Research Park, Norfolk NR4 7UZ, UK

²Department of Psychiatry, Medical Sciences Division, University of Oxford, Oxfordshire OX3 3JX, UK

³Oxford Health NHS Foundation Trust, Oxford, Oxfordshire OX3 7JX, UK

---

It consists of subdirectories of differential expression (DE), differential transcript usage (DTU), synthetic spike-in assessments (SEQUINS), a gene specific case study (CACNA2D2) and a custom annotation GTF and corresponding transcriptome fasta (ANNOTATION), along with a README.txt describing contents. These data are accompanied by the corresponding analysis scripts that can be accessed from: https://github.com/TGAC/SHSY5Y_differentiation.