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Published March 12, 2014 | Version v1
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Reassessment of the systematics of the widespread Neotropical genus Cercomacra (Aves: Thamnophilidae)

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Tello, Jose G., Raposo, Marcos, Bates, John M., Bravo, Gustavo A., Cadena, Carlos Daniel, Maldonado-Coelho, Marcos (2014): Reassessment of the systematics of the widespread Neotropical genus Cercomacra (Aves: Thamnophilidae). Zoological Journal of the Linnean Society 170 (3): 546-565, DOI: 10.1111/zoj.12116, URL: http://dx.doi.org/10.1111/zoj.12116

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urn:lsid:plazi.org:pub:FFCED16D325CBA0BD767FFDB9F51FF97
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http://publication.plazi.org/id/FFCED16D325CBA0BD767FFDB9F51FF97

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Taxonomic treatment: http://treatment.plazi.org/id/03F7A9153255BA02D441FCF19B19FC2D (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03F7A9153255BA02D4D5FC359B83FA96 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03F7A9153255BA02D4CAFAEF9B9EF99D (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03F7A9153255BA01D4E5F9E59D66FAD0 (URL)
Taxonomic treatment: 10.5281/zenodo.4720985 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03F7A9153256BA01D782FA5D9A07FD99 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03F7A9153256BA07D48DFDB59B9FFB81 (URL)
Figure: 10.5281/zenodo.4720456 (DOI)
Figure: 10.5281/zenodo.4720458 (DOI)
Figure: 10.5281/zenodo.4720460 (DOI)
Figure: 10.5281/zenodo.4720462 (DOI)
Figure: 10.5281/zenodo.4720464 (DOI)
Figure: 10.5281/zenodo.4720466 (DOI)

References

  • Aleixo A, Rossetti DF. 2007. Avian gene trees, landscape evolution, and geology: towards a modern synthesis of Amazonian historical biogeography? Journal fur Ornithologie 148 (Suppl. 2): S443-S453.
  • Ames PL. 1971. The morphology of the syrinx in passerine birds. Bulletin of the Peabody Museum of Natural History 37: 1-194.
  • Antonelli A, Quijada-Mascarenas A, Crawford AJ, Bates JM, Velazco PM, Wuster W. 2010. Molecular studies and phylogeography of Amazonian tetrapods and their relation to geological and climatic models. In: Horn C, Wesselingh FP, eds. Amazonia, landscapes and species evolution: a look into the past. Oxford: Blackwell Publishing, 386-404.
  • Barker FK. 2007. Avifaunal interchange across the Panamanian isthmus: insights from Campylorhynchus wrens. Biological Journal of the Linnean Society 90: 687-702.
  • Bates JM, Hackett SJ, Goerck JM. 1999. High levels of mitochondrial DNA differentiation in two lineages of Antbirds (Drymophila and Hypocnemis). Auk 16: 1093-1106.
  • Batista De Pinho J, Esteves Lopes L, De Morais DH, Mendes Fernandes A. 2006. Life history of the Mato Grosso Antbird Cercomacra melanaria in the Brazilian Pantanal. Ibis 148: 321-329.
  • Behling H, Bush M, Hooghiemstra H. 2010. Biotic development of Quaternary Amazonian: a palynological perspective. In: Horn C, Wesselingh FP, eds. Amazonia, landscapes and species evolution: a look into the past. Oxford: Blackwell Publishing, 335-345.
  • Belmonte-Lopes R, Bravo GA, Bornschein MR, Mauricio GN, Pie MR, Brumfield RT. 2012. Genetic and morphological data support the placement of Myrmotherula gularis (Spix) in the monotypic genus Rhopias Cabanis and Heine (Aves: Passeriformes: Thamnophilidae). Zootaxa 3451: 1-16.
  • Bierregaard RO, Cohn-Haft M, Stotz DF. 1997. Cryptic biodiversity: an overlooked species and new subspecies of antbird (Aves: Formicariidae) with a revision of Cercomacra tyrannina in northeastern South America. Ornithological Monographs 48: 111-128.
  • Blake J. 2007. Neotropical forest bird communities: a comparison of species richness and composition at local and regional scales. Condor 109: 237-255.
  • Bornschein MR, Reinert BL, Teixeira DM. 1995. Um novo Formicariidae do sul do Brasil (Aves, Passeriformes). Publicacao Tecnico-Cientifica do Instituto Iguacu de Pesquisa e Preservacao Ambiental 1: 1-18.
  • Bravo GA, Chesser RT, Brumfield RT. 2012a. Isleria, a new genus of antwren (Aves: Passeriformes: Thamnophilidae). Zootaxa 3195: 61-67.
  • Bravo GA, Whitney BM, Remsen JJV, Brumfield RT. 2012b. DNA sequence data reveal a subfamily-level divergence within Thamnophilidae (Aves: Passeriformes). Molecular Phylogenetics and Evolution 65: 287-293.
  • Brumfield RT, Tello JG, Cheviron ZA, Carling MD, Crochet N, Rosenberg KV. 2007. Phylogenetic conservatism and antiquity of a tropical specialization: armyant-following in the typical antbirds (Thamnophilidae). Molecular Phylogenetics and Evolution 45: 1-13.
  • Campbell KE, Frailey CD, Romero-Pittman L. 2006. The Pan-Amazonian Ucayali Peneplain, late Neogene sedimentation in Amazonia, and the birth of the modern Amazon River system. Palaeogeography, Palaeoclimatology, Palaeoecology 239: 166-219.
  • Colinvaux P, De Oliveira P. 2001. Amazon plant diversity and climate through the Cenozoic. Palaeogeography, Palaeoclimatology, Palaeoecology 166: 51-63.
  • Colinvaux PA, De Oliveira PE, Moreno JE, Miller MC, Bush MB. 1996. A long pollen record from lowland Amazonia: forest and cooling in glacial times. Science 274: 85-88.
  • Cory CB, Hellmayr CE. 1924. Catalogue of birds of the Americas [Pteroptochidae to Formicariidae]. Field Museum of Natural History Zoology Series 13-3: 1-372.
  • Desjardins P, Morais R. 1990. Sequence and gene organization of the chicken mitochondrial genome: a novel gene in higher vertebrates. Journal of Molecular Biology 212: 599- 634.
  • Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969-1973.
  • Farris JS, Kallersjo M, Kluge AG, Bult C. 1995a. Constructing a significance test for incongruence. Systematic Biology 44: 570-572.
  • Farris JS, Kallersjo M, Kluge AG, Bult C. 1995b. Testing significance of incongruence. Cladistics 10: 315-319.
  • Felsenstein J. 1985. Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39: 783-791.
  • Figueiredo J, Hoorn C, van der Ven P, Soares E. 2009. Late Miocene onset of the Amazon River and the Amazon deep-sea fan: evidence from the Foz do Amazonas Basin. Geology 37: 619-622.
  • Fitzpatrick JW, Willard DE. 1990. Cercomacra manu, a new species of antbird from Southwestern Amazonia. Auk 107: 239-245.
  • Frailey CD. 1988. A proposed Pleistocene/Holocene lake in the Amazon basin and its significance to Amazonian geology and biogeography. Acta Amazonica 18: 119-143.
  • Goldman N, Anderson JP, Rodrigo AG. 2000. Likelihoodbased tests of topologies in phylogenetics. Systematic Biology 49: 652-670.
  • Gomez JP, Bravo G, Brumfield RT, Tello JG, Cadena CD. 2010. A phylogenetic approach to disentangling the role of competition and habitat filtering in community assembly of Neotropical forest birds. Journal of Animal Ecology 79: 1181-1192.
  • Gradstein FM, Ogg JG, Smith AG, Bleeker W, Lourens LJ. 2004. A new geologic time scale, with special reference to Precambrian and Neogene. Episodes 27: 83-100.
  • Graves GR. 1997. Colorimetric and morphometric gradients in Colombian populations of dusky antbirds (Cercomacra tyrannina), with a description of a new species, Cercomacra parkeri. Ornithological Monographs 48: 21-35.
  • Hackett SJ, Rosenberg KV. 1990. Comparison of phenotypic and genetic differentiation in South American antwrens (Formicariidae). Auk 107: 473-489.
  • Haffer J. 1997. Alternative models of vertebrate speciation in Amazonia: an overview. Biodiversity and Conservation 6: 451-476.
  • Haffer J, Prance GT. 2001. Climatic forcing of evolution in Amazonia during the Cenozoic: on the refuge theory of biotic differentiation. Amazoniana 16: 579-607.
  • van der Hammen T, Hooghiemstra H. 2000. Neogene and Quaternary history of vegetation, climate, and plant diversity in Amazonia. Quaternary Science Reviews 19: 725-742.
  • Hellmayr CE. 1905. Notes on a collection of birds, made by Mons. A. Robert in the district of Para, Brazil. Novitates Zoologicae 12: 269-305.
  • Hellmayr CE. 1929. Catalogue of birds of the Americas and the Adjacent Islands [Oxyruncidae to Phytotomidae]. Field Museum Natural History Zoology Series 13-6: 1-264.
  • Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
  • Hoorn C, Wesselingh FP, Hovikoski J, Guerrero J. 2010b. The development of the Amazonian mega-wetland (Miocene; Brazil, Colombia, Peru, Bolivia). In: Horn C, Wesselingh FP, eds. Amazonia, landscapes and species evolution: a look into the past. Oxford: Blackwell Publishing, 123-142.
  • Hoorn C, Wesselingh FP, Steege HT, Bermudez MA, Mora A, Sevink J, Sanmartin I, Sanchez-Meseguer A, Anderson CL, Figueiredo JP, Jaramillo C, Riff D, Negri FR, Hooghiemstra H, Lundberg J, Stadler T, Sarkinen T, Antonelli A. 2010a. Amazonia through time: andean uplift, climate change, landscape evolution, and biodiversity. Science 330: 927-931.
  • Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
  • Irestedt M, Fjeldsa J, Johansson US, Ericson PGP. 2002. Systematic relationships and biogeography of the Tracheophone Suboscines (Aves: Passeriformes). Molecular Phylogenetics and Evolution 23: 499-512.
  • Irestedt M, Fjeldsa J, Nylander JAA, Ericson PGP. 2004. Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes Factors. BMC Evolutionary Biology 4: 23.
  • Isler ML, Bravo GA, Brumfield RT. 2013. Taxonomic revision of Myrmeciza (Aves: Passeriformes: Thamnophilidae) into 12 genera based on phylogenetic, morphological, behavioral, and ecological data. Zootaxa 3717: 469-497.
  • Isler ML, Lacerda DR, Isler PR, Hackett SJ, Rosenberg KV, Brumfield RT. 2006. Epinecrophylla, a new genus of antwrens (Aves: Passeriformes: Thamnophilidae). Proceedings of the Biological Society of Washington 119: 522-527.
  • Isler ML, Whitney BM. 2011. Species limits in the antbirds (Thamnophilidae): the scale-backed antbird (Willisornis poecilonotus) complex. The Wilson Journal of Ornithology 123: 1-14.
  • Isler PR, Whitney BM. 2002. Songs of the antbirds: Thamnophilidae, Formicariidae, and Conopophagidae (two CDs). Ithaca, NY: Macaulay Library of Natural Sounds, Cornell Lab of Ornithology.
  • Kass RE, Raftery AE. 1995. Bayes factors. Journal of the American Statistical Association 90: 773-795.
  • Klammer G. 1984. The relief of the extra-Andean Amazon basin. In: Sioli H, ed. The Amazon: limnology and landscape ecology of a mighty tropical river and its basin. Dordrecht: Dr. W. Junk Publishers, 47-83.
  • Kratter AW. 1998. The nests of two bamboo specialists: Celeus spectabilis and Cercomacra manu. Journal of Field Ornithology 69: 37-44.
  • Latrubesse EM, Cozzuol M, da Silva-Caminha SA, Rigsby CA, Absy ML, Jaramillo C. 2010. The Late Miocene paleogeography of the Amazon Basin and the evolution of the Amazon River system. Earth-Science Reviews 99: 99-124.
  • Lovette IJ. 2004. Molecular phylogeny and plumage signal evolution in a trans Andean and circum Amazonian avian species complex. Molecular Phylogenetics and Evolution 32: 512-523.
  • Lundberg JG, Marshall LG, Guerrero J, Horton B, Malabarba MCSL, Wesselingh F. 1998. The stage of Neotropical fish diversification: a history of Tropical South American rivers. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS, Lucena CAS, eds. Phylogeny and classification of neotropical fishes. Porto Alegre: Editora da Pontificia Universidade Catolica do Rio Grande do Sul, 13-48.
  • Marroig G, Cerqueira R. 1997. Plio-Pleistocene South American history and the Amazon lagoon hypothesis: a piece in the puzzle of Amazonian diversification. Journal of Comparative Biology 2: 103-119.
  • Mason-Gamer R, Kellog E. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
  • Menetries E. 1835. Monographie de la famille des Myotherinae ou sont decrites les especes qui ornent le Musee d'Academie imperiale des Sciences. Memoires de l'Academie des Sciences de St.- Petersburg, 6th serie 3: 443-544.
  • Miller MJ, Bermingham E, Klicka J, Escalante P, do Amaral FS, Weir JT, Winker K. 2008. Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher. Proceedings of the Royal Society B 275: 1133-1142.
  • Moyle RG, Chesser RT, Brumfield RT, Tello JG, Marchese DJ, Cracraft J. 2009. Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: Infraorder Furnariides). Cladistics 25: 386-405.
  • Nylander JAA, Ronquist F, Huelsenbeck JP, Nieves- Aldrey JL. 2004. Bayesian phylogenetic analysis of combined data. Systematic Biology 53: 47-67.
  • Ohlson JI, Irestedt M, Ericson PGP, Fjeldsa J. 2013. Phylogeny and classification of the New World suboscines (Aves, Passeriformes). Zootaxa 3613: 1-35.
  • Patel S, Weckstein JD, Patane JS, Bates JM, Aleixo A. 2011. Temporal and spatial diversification of Pteroglossus aracaris (Aves: Ramphastidae) in the Neotropics: constant rate of diversification does not support an increase in radiation during the Pleistocene. Molecular Phylogenetics and Evolution 58: 105-115.
  • Pereira SL, Baker AJ. 2004. Vicariant speciation of Curassows (Aves, Cracidae): a hypothesis based on mitochondrial DNA phylogeny. Auk 121: 682-694.
  • Peters JL. 1951. Check-list of birds of the world. Cambridge, MA: Museum of Comparative Zoology.
  • Posada D. 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
  • Rambaut A, Drummond AJ. 2007. Tracer v1.5. Available at: Tracer v1.5. http://tree.bio.ed.ac.uk/software/tracer/
  • Rambaut A, Grassly NC. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Computational Applied Biosciences 13: 235-238.
  • Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
  • Remsen JV, Cadena CD, Jaramillo A, Nores M, Pacheco JF, Perez-Eman J, Robbins MB, Stiles FG, Stotz DF, Zimmer KJ. 2013. A classification of the bird species of South America. American Ornithologists' Union. Available at: http://www.museum.lsu.edu/~Remsen/SACCBaseline .html
  • Remsen JV, Rocha O, Schmitt G, Schmitt DC. 1991. Zoogeography and geographic variation of Platyrinchus mystaceus in Bolivia and Peru, and the circum-Amazonian distribution pattern. Ornitologia Neotropical 2: 77-83.
  • Ribas CC, Miyaki CY, Cracraft J. 2009. Phylogenetic relationships, diversification and biogeography in Neotropical Brotogeris parakeets. Journal of Biogeography 36: 1712- 1729.
  • Ridgely RS, Tudor G. 1994. The birds of South America. Part II: the suboscine passerines. Austin, TX: University of Texas Press.
  • Ronquist F, Huelsenbeck JP, Teslenko M. 2011. Draft MrBayes version 3.2 Manual: Tutorials and Model Summaries. Available at: http://mrbayes.sourceforge.net/mb3.2 _manual.pdf
  • Sclater PL. 1858. A synopsis of the American Ant-birds (Formicariidae). Part II. Proceedings of the Zoological Society of London 26: 232-254.
  • Sclater PL. 1890. Catalogue of the Passeriformes or Perching Birds in the Collection of the British Museum: Trachaeophonae, or the families Dendrocolaptidae, Formicariidae, Conopophagidae, and Pteroptochidae. Vol. 15. London: Order of the Trustees, 1-371.
  • Sibley CG, Ahlquist JE. 1990. Phylogeny and classification of birds. New Haven, CT: Yale University Press.
  • Silva JMC. 1992. Phylogeny of the Cercomacra nigricans species group (Aves: Thamnophilidae) and the biogeographical importance Pliocene-Pleistocene tectonic movements. Goeldiana Zoologia 18: 1-8.
  • Stotz DF, Fitzpatrick JW, Parker III TA, Moskovits DK. 1996. Neotropical birds: ecology and conservation. Chicago, IL: University of Chicago Press.
  • Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (* and another methods) 4.0 Beta. Sunderland, MA: Sinauer Associates Inc.
  • Terborgh J, Robinson S, Parker III T, Munn C, Pierpont N. 1990. Structure and organization of an Amazonian forest bird community. Ecological Monographs 60: 213-238.
  • Vielliard J. 1995. Guia Sonoro das Aves do Brasil, CD no.1. Campinas, Sao Paulo, Brasil: Academia Brasileira de Ciencias, UNICAMP.
  • Wanderley-Filho JR, Eiras JF, Cunha PRC, van der Ven PH. 2010. On the origin of Amazonian landscapes and biodiversity: a synthesis. In: Horn C, Wesselingh FP, eds. Amazonia, landscapes and species evolution: a look into the past. Oxford: Blackwell Publishing, 29-37.
  • Weir JT, Bermingham E, Schluter D. 2009. The Great American Biotic Interchange in birds. Proceedings of the National Academy of Sciences U S A 106: 21737-21742.
  • Weir JT, Schluter D. 2008. Calibrating the avian molecular clock. Molecular Ecology 17: 2321-2328.
  • Welsh CJ. 1977. Phylogeny of the antbirds (Formicariidae and Thamnophilidae) based on hindlimb myology and plumage. PhD, University of Pittsburgh, Pittsburgh.
  • Wesselingh FP, Hoorn C, Kroonenberg SB, Antonelli A, Lundberg J, Vonhof HB, Hooghiemstra H. 2010. On the origin of Amazonian landscapes and biodiversity: a synthesis. In: Horn C, Wesselingh FP, eds. Amazonia, landscapes and species evolution: a look into the past. Oxford: Blackwell Publishing, 421-431.
  • Yang Z, Rannala B. 1997. Bayesian phylogenetic inference
  • Zimmer KJ, Isler ML. 2003. Family Thamnophilidae (Typical antbirds). In: del Hoyo J, Elliot A, Sargatal J, eds. Handbook of the birds of the world. Vol. 8. Broadbills to Tapaculos. 1st edn. Barcelona: Lynx Edicions, 448-681.
  • Zimmer KJ, Whittaker A, Stotz DF. 1997. Vocalizations, behavior, and distribution of the Rio Branco Antbird. Wilson Bulletin 109: 663-678.
  • Zwickl DJ. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD dissertation, The University of Texas at Austin.