Published April 26, 2021 | Version v1

Molecular simulations and pre-analyzed data for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'

  • 1. University of Copenhagen

Description

All-atom MD simulations and pre-analyzed data of the Vav1 AD construct:
1) the `trajectories.tgz` directory contains all the molecular simulations (exploratory MD, MD shootings from different locations on the free energy landscape, WTMetaD and PBMetaD) in xtc format and without water; 
2) the `data.tgz` directory contains the values of the collective variables calculated from all the aforementioned simulations, the MetaD hills files and the topology files; 
3) the `plumed.tgz` directory contains the plumed files needed to reproduce and reweight the metadynamics simulations (WTMetaD and PBMetaD) and to calculate the CVs from simulations. 

Files

Files (9.6 GB)

Name Size
md5:36eb5d70f6de98be37750a5c36ff6032
1.7 GB Download
md5:97d548d7564ca5c23dc04fe0ad18d6d0
307.4 kB Download
md5:62cce35fbfde643b4bb2f228360cc016
8.0 GB Download