Published April 21, 2021
| Version 1.2
Dataset
Open
Deep Mutagenesis of a Transporter for Uptake of a Non-Native Substrate Identifies Conformationally Dynamic Regions
Authors/Creators
- 1. University of Illinois at Urbana-Champaign
Description
Molecular dynamics simulations of the APP+ import mechanism of the human serotonin transporter. Manuscript in review.
SeTWT-APP.pdb - sample structure file of SERT embedded in POPC lipid bilayer, solvated with NaCl and TIP3P water molecules.
SeTWT-APP-stripped.pdb - stripped (no lipids or water) topology file for SERT APP+ trajectories.
MSM_600microstates_100samples.zip contains trajectory files of 100 structures of each microstates (600 total) from the Markov state model in xtc format.
SeTWT-APP-600microstates-1sample.dcd - coordinates of 1 sampled structure from each microstate. May be viewed in visualization software such as VMD or PyMOL.
Residue numbering in the trajectories/pdbs is offset by 75 from the original SERT sequence.
Notes
Version 1.2: Updated SeTWT-APP.pdb files with residue numbering based on the SERT sequence