Published April 14, 2021
| Version 1.0.0
Dataset
Open
Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant
Authors/Creators
- 1. UCSF
- 2. IGI
- 3. Monterey County Public Health
- 4. CDPH
- 5. CZB
Description
This dataset contains the following:
- genome fasta files from viral whole-genome sequencing of SARS-CoV-2 positive nasal/nasopharyngeal swabs
- codes used to analyze epidemiologic data (i.e. logistic growth curves, transmission rate, doubling time) and generate plots and figures
- codes used to perform statistical analysis and visualization of viral loads
- phylogenetic analyses description, trees, and logs
- supplementary tables with relevant sample information
Files
Ct_boxen_plots.ipynb
Files
(104.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:9cf7ea1ad81d9008c9cf0f02d6c1c975
|
1.2 MB | Preview Download |
|
md5:dca39c3bdd071160e9586441571db8e1
|
9.5 kB | Download |
|
md5:ff7455d88bb0937702669e9144b7f894
|
1.3 kB | Download |
|
md5:2e22c1347d7ae3e4e94fdf58b3fdd92f
|
4.8 kB | Download |
|
md5:fe419ef7281b70b5ab4b7ab679c991e0
|
519 Bytes | Preview Download |
|
md5:0af37fbc87e479fe4c3bf39966b47df9
|
3.9 kB | Download |
|
md5:23c17cb8e470be18b1a083a22287d008
|
62.3 MB | Download |
|
md5:731c21999c871c1dd485a430a205e663
|
14.7 MB | Download |
|
md5:da06b05294251ad612391fa99c818a35
|
2.8 MB | Download |
|
md5:0557525c72cbbc74229d4697193a9639
|
300.5 kB | Download |
|
md5:0a2aa6c33ff9c781f0dd498b7658a75e
|
2.8 MB | Download |
|
md5:c877c1674afb87279a8960e9e4bb8d20
|
5.6 MB | Download |
|
md5:5a10e30d8db4c2c93858f87615a452c6
|
14.8 MB | Preview Download |
|
md5:e4e7f44a5613e17b5764e210fdd6e510
|
58.1 kB | Download |
|
md5:026c1459543e319d32e464aedde42d9c
|
147.5 kB | Download |
|
md5:7d45afd9841374cacd17fda2639aeff8
|
43.2 kB | Preview Download |