Journal article Open Access
A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro
Cheng;
Porritt;
Noval Rivas;
Krieger;
Ozdemir;
Garcia Jr;
Arumugaswami;
Fries;
Arditi;
Bahar
Representative coordinate files in PDB format (homology models and docking models) from the work which first appeared on bioRxiv and later accepted for publication by Structure.
A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro
Mary Hongying Cheng, Rebecca A. Porritt, Magali Noval Rivas, James M Krieger, Asli Beyza Ozdemir, Gustavo Garcia Jr, Vaithilingaraja Arumugaswami, Bettina C. Fries, Moshe Arditi and Ivet Bahar
bioRxiv 2020 Nov 24;2020.11.24.395079. doi: 10.1101/2020.11.24.395079. Preprint
https://pubmed.ncbi.nlm.nih.gov/33269352/
Six PDB files are uploaded
(1) Homology model of human TMPRSS2.
(2) Docking model of SARS-CoV-2 Spike bound to TMPRSS2.
(3) Docking model of SARS-CoV-2 Spike bound to furin.
(4) Docking model of antibody 6D3 bound to SARS-CoV-2 spike in one up state.
(5) Docking model of antibody 6D3 bound to SARS-CoV-2 Spike in down states.
(6) Docking model of antibody 6D3 bound to HCoV-OC43 Spike in down states.
| Name | Size | |
|---|---|---|
|
Antibody 6D3 bound to HCoV OC43 on 6NZK.pdb
md5:ed8a388a762757b9dcc70a9b67fcc090 |
3.0 MB | Download |
|
Antibody 6D3 bound to SARS-CoV-2 Spike in down states.pdb
md5:cc5df9dbe0ec9f3c65553930e73a41a2 |
2.9 MB | Download |
|
Antibody 6D3 bound to SARS-CoV-2 Spike on 6VSB.pdb
md5:59f6d24ae662200bde9222f767de1b66 |
2.8 MB | Download |
|
Homology model Human_TMPRSS2_on_PDB5CE1.pdb
md5:673472c80d8f2184d6abee47f81f6797 |
155.5 kB | Download |
|
SARS-CoV-2 spike_TMPRSS2_refined_model.pdb
md5:1b080ef64ebaf91d6f38d810e9fb190c |
2.8 MB | Download |
|
SARS-CoV2 spike_furin_refined_model.pdb
md5:8ca6dda40c735bb6472044b8f6702e6e |
3.0 MB | Download |
| All versions | This version | |
|---|---|---|
| Views | 206 | 206 |
| Downloads | 88 | 88 |
| Data volume | 222.2 MB | 222.2 MB |
| Unique views | 184 | 184 |
| Unique downloads | 54 | 54 |
- Publication date:
- November 24, 2020
- DOI:
-
- License (for files):
- Creative Commons Attribution 3.0 United States