Published April 2, 2021
| Version v1
Dataset
Open
Whole-body integration of gene expression and single-cell morphology
Authors/Creators
- Hernando M. Vergara
- Constantin Pape
- Kimberly I. Meechan
- Valentyna Zinchenko
- Christel Genoud
- Adrian A. Wanner
- Kevin Nzumbi Mutemi
- Benjamin Titze
- Rachel M. Templin
- Paola Y. Bertucci
- Oleg Simakov
- Wiebke Dürichen
- Pedro Machado
- Emily L. Savage
- Lothar Schermelleh
- Yannick Schwab
- Rainer W. Friedrich
- Anna Kreshuk
- Christian Tischer
- Detlev Arendt
Description
Animal bodies are composed of hundreds of cell types that differ in location, gene expression, morphology, cytoarchitecture, and physiology. Integrating information from these distinct levels has the potential to unravel developmental, physiological, and evolutionary principles. We established and explored the link between cell-type-specific gene expression and subcellular morphology for the entire body of the marine annelid Platynereis dumerilii. For this, we registered a whole-body cellular expression atlas to a high-resolution electron microscopy dataset, segmented all cell somata and nuclei and traced a subset of the neurons in the head. The neuron reconstructions as provided for download here allow for detailed analyses of morphology, projections and subcellular features of different neuron types. The reconstructions can be visualized in PyKNOSSOS (https://github.com/adwanner/PyKNOSSOS).
H.M. Vergara, C. Pape, K. Meechan, V. Zinchenko, C. Genoud, A.A. Wanner, B. Titze, R. Templin, P.Y. Bertucci, O. Simakov, et al. (2020). Whole-body integration of gene expression and single-cell morphology. bioRxiv (2020), 10.1101/2020.02.26.961037
https://www.biorxiv.org/content/10.1101/2020.02.26.961037v1
Files
Files
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Additional details
Related works
- Is supplement to
- Dataset: 10.5281/zenodo.3675288 (DOI)
- Dataset: 10.5281/zenodo.3676534 (DOI)
- Dataset: 10.5281/zenodo.3675220 (DOI)
- Dataset: 10.5281/zenodo.3678793 (DOI)
- Dataset: 10.5281/zenodo.3690727 (DOI)