Dataset Open Access

Local Z Projector example dataset and parameters 01

Léo Valon; Jean-Yves Tinevez

Drosophila pupa notum, captured with a laser-scanning confocal microscope (LSM 880, Zeiss). Pixel size 0.188 µm, z step 1 µm.

This dataset  also contains the parameters to generate the reference surface and local projection, also included. It is meant to be used with the Fiji plugin called 'LocalZProjector': https://gitlab.pasteur.fr/iah-public/localzprojector. The two *.localzprojector files can be loaded directly in the plugin to load adequate parameters.

See the accompanying paper: DProj: A toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.

https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2

This is a downsampled version of the dataset used to generate the figures 1, 2 and 3 in this paper, as well as the comparison in table 1.

 

Files (362.6 MB)
Name Size
LValonMultiC-LZP.tif
md5:a77360b5779ec5bd46d439e000deb878
13.2 MB Download
LValonMultiC-params-screenshot.png
md5:0763b47ebac2bddc9b9b03d7c4ea3123
49.2 kB Download
LValonMultiC-RefSurf.tif
md5:5c7f6f72180906e12e7db98de17e76e6
6.6 MB Download
LValonMultiC.heightmap.lzp.json
md5:33534d3f9c21dfd1014f077e4a1d9f77
158 Bytes Download
LValonMultiC.localproj.lzp.json
md5:e2c6fe05c70af8c216f62de165a63e2c
149 Bytes Download
LValonMultiC.tif
md5:1ea025d658e4130c28ceb1a685aa0781
342.8 MB Download
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