There is a newer version of this record available.

Dataset Open Access

miRNA target finder training datasets

Gallardo-Alba, Cristóbal

Datasets needed to run the Galaxy training:  miRNA target finder in Arabidopsis thaliana

Files (263.8 MB)
Name Size
annotation_AtRTD2_19April2016.gtf.gz
md5:8d64d472daf45bfebdf4d00717dec101
6.1 MB Download
arabidopsis_thaliana_genome.fasta.gz
md5:70c837a2224b5fc604ebeaec5425697a
38.7 MB Download
mature_miRNA_AT.fasta
md5:abaa12d0072baabe8a7957f4cfd17246
7.7 kB Download
miRNA_stem-loop_seq.fasta
md5:8956c11d5176e661f47140ad49676689
27.7 kB Download
PmiREN_miRNA_database.fasta
md5:abaa12d0072baabe8a7957f4cfd17246
7.7 kB Download
SRR1019436_RNASEQ_CTL.fastqsanger.gz
md5:860343e34ff5842d9aa7368e4b521e01
22.0 MB Download
SRR1019437_RNASEQ_CTL.fastqsanger.gz
md5:8cb65af3e9a616abb8414cdf96e4ca82
24.0 MB Download
SRR1019438_RNASEQ_BL.fastqsanger.gz
md5:f782ef2368345699fe74bfce374c62a6
23.8 MB Download
SRR1019439_RNASEQ_BL.fastqsanger.gz
md5:cff8b700b7b2706af7f619ce352d212e
23.8 MB Download
SRR11611349_MIRNASEQ_CTL.fastqsanger.gz
md5:53250a1fe8c7da369e031bace9ba17a1
18.8 MB Download
SRR11611350_MIRNASEQ_CTL.fastqsanger.gz
md5:27a619a2cd301732be894d7cb6f37723
15.7 MB Download
SRR11611351.MIRNASEQ_CTLfastqsanger.gz
md5:37181d275ba214b65fe5c3a0836fff40
17.1 MB Download
SRR11611352_MIRNASEQ_BL.fastqsanger.gz
md5:351c959aebe763c7b95dc1288999ad5a
17.7 MB Download
SRR11611353_MIRNASEQ_BL.fastqsanger.gz
md5:860d15dde59624c870c0731e66346016
19.2 MB Download
SRR11611354_MIRNASEQ_BL.fastqsanger.gz
md5:1210b3ab28e3d8f057b47cb63c648359
10.5 MB Download
star_miRNA_seq.fasta
md5:93c352ffb59b95b919d0f7cb1c302dfa
7.9 kB Download
transcriptome_AtRTD2_12April2016.fasta.gz
md5:4f2561c0b800a0e2466dcfca93a123f1
26.4 MB Download
upregulated_miRNA_BR_complete_dataset.fasta
md5:99ff1d82f862a04778ddbcfef7c64563
942 Bytes Download
  • Park, S. Y., Choi, J. H., Oh, D. H., Johnson, J. C., Dassanayake, M., Jeong, D. H., & Oh, M. H. (2020). Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics, 42(8), 957-969.

  • Oh, Eunkyoo, et al. "Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl." elife 3 (2014): e03031.

  • Zhang, R., Calixto, C.P.G., Marquez, Y., Venhuizen, P., Tzioutziou, N.A., Guo, W., Spensley, M., Frei dit Frey, N., Hirt, H., James, A.B., Nimmo, H.G., Barta, A., Kalyna, M., Brown, J.W.S (2016) AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data. bioRxiv doi: http://dx.doi.org/10.1101/051938

  • PmiREN: a comprehensive encyclopedia of plant miRNAs. Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao, C Cheng, J Yang, X Lu, C Hao, T Wang, X Cao, J Wei, L Li, and X Yang. Nucleic Acids Res. 2019. doi: 10.1093/nar/gkz894.

  • Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., ... & Huala, E. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic acids research, 40(D1), D1202-D1210.

38
845
views
downloads
All versions This version
Views 3818
Downloads 845804
Data volume 27.7 GB12.1 GB
Unique views 2915
Unique downloads 121107

Share

Cite as