Presentation Open Access
iPRG-2020: Proteome Informatics Research Group Study on Metaproteomics
Pratik Jagtap;
Susan T. Weintraub;
Darryl Davis;
Antony Harvey;
Michael Hoopmann;
Lukas Käll;
Samuel H. Payne;
Yasset Perez-Riverol;
Magnus Palmblad
Metaproteomics – the characterization of proteins expressed by microbiomes – presents a range of technical challenges, from sampling to data processing and interpretation. In the iPRG 2020 study, we investigated the status of metaproteomics data analysis workflows by posing questions to the metaproteomics studies in two studies. In two phases of the study, the participants were asked to deduce the organisms or taxa in a metaproteomics sample (“What species are represented in the sample?”) and what biological phenomena have taken place (“What interactions took place between the species in the mixture?”). The outputs from these studies will be presented at the RG session at ABRF 2021.
| Name | Size | |
|---|---|---|
|
ABRF 2021 March iPRG Study 03082021.pdf
md5:530bc792c8a7c74741d70de1068c99b0 |
1.8 MB | Download |
| All versions | This version | |
|---|---|---|
| Views | 61 | 61 |
| Downloads | 35 | 35 |
| Data volume | 62.5 MB | 62.5 MB |
| Unique views | 55 | 55 |
| Unique downloads | 32 | 32 |
- Publication date:
- March 11, 2021
- DOI:
-
- Keyword(s):
- Bioinformatics Metaproteomics Microbiome
- Meeting:
- Association of Biomolecular Resource Facilities (ABRF), Virtual, 7-11 March 2021
- License (for files):
- Creative Commons Attribution 4.0 International