Dataset Open Access
Data for Developmental cell programs are co-opted in inflammatory skin disease - filtered, annotated anndata object
Gary Reynolds;
Peter Vegh;
James Fletcher;
Elizabeth Poyner;
Muzlifah Haniffa;
Fiona Watt;
Sarah Teichmann
Dataset to accompany BioRxiv preprint "Poised cell circuits in human skin are activated in disease" (https://www.biorxiv.org/content/10.1101/2020.11.05.369363v1). Data in AnnData (h5ad) format. Preprocessed to exclude doublets and low quality cells (<200 genes and >20% mitochondrial content).
Healthy.h5ad includes neighborhood graph and UMAP coordinates and annotation from the manuscript in figure 1B.
Full dataset with annotation ("combined") in obs.
This has been updated - the previous version had multiple old annotations that are no longer in use,
Files
(5.7 GB)
| Name | Size | |
|---|---|---|
|
completeSS2.RDS
md5:d5569f1cd14cc3b4357c2bc4a301cd39 |
87.3 MB | Download |
|
fetal_submission.h5ad
md5:43fff9730eebffa6da33d434957a7b20 |
533.2 MB | Download |
|
healthy.h5ad
md5:9aa6715d272bab7b7169d8fee848ca17 |
1.2 GB | Download |
|
submission_210120.h5ad
md5:0f76145e788f04e38750e5679c385b81 |
3.9 GB | Download |
4,892
3,100
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 4,892 | 1,462 |
| Downloads | 3,100 | 943 |
| Data volume | 28.1 TB | 2.0 TB |
| Unique views | 3,089 | 1,142 |
| Unique downloads | 1,514 | 455 |
Indexed in
- Publication date:
- November 24, 2020
- DOI:
-
- License (for files):
- Creative Commons Attribution 4.0 International