Published February 19, 2021
| Version v1
Software
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Supplementary Code for paper "Modeling of Astrocyte Networks: Toward Realistic Topology and Dynamics"
- 1. Department of Theoretical Physics, Kursk State University, Kursk, Russia
- 2. Department of Optics and Biophotonics, Saratov State University, Saratov, Russia
- 3. Department of Biophyics, faculty of Biology, Lomonosov Moscow State University, Moscow, Russia
Description
Supplementary Code for paper "Modeling of Astrocyte Networks: Toward Realistic Topology and Dynamics"
This is the accompanying code (CUDA + Python + Jupyter notebook) for the paper: Verisokin AY, Verveyko DV, Postnov DE and Brazhe AR (2021) Front. Cell. Neurosci. 15:645068. doi: 10.3389/fncel.2021.645068
Model code
Main model code is in astroVolume/astroVolume.cu. Code compilation and running can be run from python (see jupyter notebooks).
How to run the code
- Install Anaconda python (https://www.anaconda.com/products/individual)
- Use
environment.ymlto create Anaconda environment with dependencies - Install Nvidia CUDA (e.g.
apt install nvidia-cuda-toolkitin Ubuntu) - Run Jupyter notebooks
- NetworkTemplateCreation.ipynb reproduces creation of network templates
- RunningNetworkSim.ipynb shows how to run simulations
Files
ageom-paper-supplementary.zip
Files
(96.5 MB)
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