Published February 16, 2021
| Version 1
Dataset
Open
Negative instances for detecting LTR-Retrotransposons using Machine Learning
Authors/Creators
- 1. Department of Computer Science, Universidad Autónoma de Manizales, Manizales, Colombia
- 2. Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia
- 3. Institut de Recherche pour le Développement, CIRAD, Univ. Montpellier, France
- 4. Department of Systems and Informatics, Universidad de Caldas, Manizales, Colombia
Description
This dataset is composed of genomic features other than LTR-Retrotransposons (LTR_RTs), such as coding sequences (CDS), different types of RNA (e.g., mRNA, tRNA, non-coding RNA, among others), and other types of transposable elements that do not belong to LTR-RTs (e.g., TEs Class II, PLEs, DIRs, LINEs, and SINEs) from the same plant species contained in InpactorDB (DOI 10.5281/zenodo.4386316). These additional transposable element sequences were available in databases such as PGSB PlantsDB, Repbase (v. 20.05, 2017), RepetDB, Ensembl Plants, and JGI (Joint Genome Institute).
Files
negative_instances_raw.zip
Files
(907.1 MB)
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