NeuroPAL Information, Software, and Datasets
Published February 7, 2021 | Version 1
Dataset Open

NeuroPAL Microfluidic Chip Images, GCaMP, and dNMF Neuronal Activity

Authors/Creators

  • 1. Columbia University
  • 2. Northeastern University
  • 3. Harvard University

Description

Microfluidic chip experiments for the NeuroPAL publications "NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans" and "Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization" (dNMF). This dataset contains image volumes, GCaMP recordings, and neuronal activity.

Please see the included README for more information.

The image volumes are best viewed using the NeuroPAL ID software available at:

https://www.hobertlab.org/neuropal/
OR
https://github.com/amin-nejat/CELL_ID

 

An in-depth description of NeuroPAL is available at:

https://www.cell.com/cell/fulltext/S0092-8674(20)31682-2

OR

https://www.biorxiv.org/content/10.1101/676312v2

 

An in-depth description of dNMF is available at:

https://www.biorxiv.org/content/10.1101/2020.07.07.192120v1

 

Files

NeuroPAL Microfluidic Experiments.zip

Files (5.3 GB)

Name Size
md5:ab9b5b39fb4559f00727cb9c7e6aeed2
5.3 GB Preview Download

Additional details

Related works

Is supplement to
Preprint: 10.1101/676312 (DOI)
Preprint: 10.1101/2020.07.07.192120 (DOI)
Is supplemented by
Journal article: 10.1016/j.cell.2020.12.012 (DOI)

References

  • Microfluidic experiments related to Yemini, E et al., Cell 2021: "NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans"
  • Neuronal activity related to Nejatbakhsh, A et al., bioRxiv 2020: "Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization"