There is a newer version of this record available.

Dataset Open Access

Inspector Javert's Xref Database

Charles Tapley Hoyt

It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.

We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.

It was generated with the following code in the shell:

pip install pyobo
pyobo obo xrefs

More information on this blog post: https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html.

Files (344.4 MB)
Name Size
xrefs.tsv.gz
md5:9a72899bf023e722bba5407867c16a4c
344.4 MB Download
xrefs_sample.tsv
md5:c38d73bc2a7a7a80afd4c12634992b9f
200 Bytes Download
xrefs_summary.tsv
md5:271aed4835fd7d2542482fc2554f944b
9.2 kB Download
xrefs_summary_provenance.tsv
md5:0aff0940fb77ee71378544410643f44f
19.9 kB Download
218
91
views
downloads
All versions This version
Views 2183
Downloads 912
Data volume 19.4 GB344.4 MB
Unique views 1863
Unique downloads 512

Share

Cite as