Published January 26, 2016 | Version v1
Dataset Open

Optimal Displacement Increment for Numerical Frequencies (Dataset)

Creators

  • 1. Independent

Description

1H-pyrrolo[3,2-h]quinoline [Gorski, 2012] was optimized in ORCA v3.0.3 [Neese, 2012; http://orcaforum.cec.mpg.de] using RPBE [Perdew, 1992 and 1996] with the def2-TZVP basis sets [Weigend, 1998], and the def2-TZVP/J auxiliary bases [Weigend, 2006] for the RI approximation [Vahtras, 1992]. The nuclear Hessian, normal modes, and harmonic vibrational frequencies were then computed using analytical (ANFREQ) and numerical (NUMFREQ) methodologies.  The numerical Hessians were computed with nuclear (Cartesian) displacement increments ranging from 0.0001 Bohr to 0.1 Bohr.  The geometry optimization was conducted using the parameters of the TIGHTOPT simple input keyword; KS-SCF and CP-SCF calculations used VERYTIGHTSCF thresholds.

An analysis of the deviation of normal modes and harmonic frequencies for each numerical Hessian computation from the analytical Hessian results was presented as a single-figure presentation (SFP) at the 2016 Virtual Winterschool on Computational Chemistry (http://winterschool.cc). This SFP can be found at doi:10.5281/zenodo.44807.

For the initial OPT and ANFREQ, the following files are provided:
PQ_OPT_AFQ.engrad -- Gradient data
PQ_OPT_AFQ.gbw -- Wavefunction 
PQ_OPT_AFQ.hess -- Hessian data
PQ_OPT_AFQ.out -- Computation output
PQ_OPT_AFQ.trj -- Optimization trajectory (multi-frame OpenBabel XYZ)
PQ_OPT_AFQ.txt -- ORCA input file
PQ_OPT_AFQ.xyz -- Optimized geometry

For each following NUMFREQ, the following files are provided, where the number at the end of the filename indicates the nuclear displacement increment in Bohrs:
PQ_NFQ_0.####.hess -- Hessian data
PQ_NFQ_0.####.out -- Computation output
PQ_NFQ_0.####.txt -- ORCA input file

Since ORCA does not report non-mass-weighted normal modes, these are provided separately for each calculation as modes_0.####.csv (modes_A.csv for the analytical Hessian.)

The dot products of each normal mode from the numerical Hessian computations with the corresponding mode in the analytical Hessian calculation (modes ordered as presented in the ORCA output) are provided in modes_dot_products.csv. The MAD of these data are plotted in the LH figure of the above-referenced SFP.

For those numerical Hessian computations with normal modes out of sequence relative to the analytical calculation, permutation matrices to bring them back in accord with the analytical Hessian modes are included as swaps_0.####.csv.

A table of the calculated vibrational frequencies for each computation, re-ordered as necessary to bring the normal modes in accord with the analytical Hessian run, is included as freqs_swapped.csv. The MAD and maximum absolute deviation of these data are plotted in the RH figure of the above-referenced SFP.

Files

freqs_swapped.csv

Files (6.9 MB)

Name Size Download all
md5:4fa13d690ce91721777fb0a98a019c06
13.4 kB Preview Download
md5:acfdc0659954cd999944499ba3cddf58
73.6 kB Preview Download
md5:d769fdabc84c3affa56f18cbab75195e
73.1 kB Preview Download
md5:924cbe677241f1e0ff0e7af31059b8bb
72.5 kB Preview Download
md5:68b96aa955900437f39a6a06e930c67c
72.4 kB Preview Download
md5:d95ecb13757beb9767b9c7bee27b0cb1
72.4 kB Preview Download
md5:b65c2f4c9e130e114832d9f79f2e5227
72.1 kB Preview Download
md5:55b1cabe91127b7f43237bb1724acac0
71.5 kB Preview Download
md5:12625c8090767e6463bcc601d37d973b
71.6 kB Preview Download
md5:037280a0aaa7dc95c1be84f5a7531bfb
71.6 kB Preview Download
md5:6c8c68921cca03247adc0da69a0d808e
72.8 kB Preview Download
md5:e8597c26cc2367d422a1c90a9dcf70d2
71.5 kB Preview Download
md5:6bd3e559f120aab180a72aba1ffb6b8d
71.3 kB Preview Download
md5:4a8741490bc180adaa67ac99949230cf
71.7 kB Preview Download
md5:ee9921db8dd52d5ad0cf308c87f59290
72.1 kB Preview Download
md5:e6f16a1814c755339478b8ea46dada9e
72.3 kB Preview Download
md5:5369d732c0c39db5604c9092d09e8b80
70.9 kB Preview Download
md5:6592dedd3ec93b1ec1ade2125c583b12
71.2 kB Preview Download
md5:dd69aa29d0dcc79dfd71463090b3eec1
71.2 kB Preview Download
md5:98a2ffe7453cc4c05f69d3563a29bb48
71.4 kB Preview Download
md5:4ed0bafa0611ab158ac577565433e30f
19.8 kB Preview Download
md5:a555097947e0b38cad8dd5ef202f095d
117.1 kB Download
md5:97c4cb48717ebc4962d0294164cbc594
150.0 kB Download
md5:b77097fa6240a546dcce29e52adbda91
1.7 kB Preview Download
md5:3a3808e96b338e4e01aac8e558a3b463
117.1 kB Download
md5:1b8f4ac0c7c4fd5bec9763ee30001cdf
150.0 kB Download
md5:23abc29b415124df34e81b743ce9b039
1.8 kB Preview Download
md5:e08622585e3517afa7b2892ea9570c7e
117.1 kB Download
md5:70d7983a63b86df1bb247613756c43e5
150.0 kB Download
md5:0d58551239c593167ee736f637e74f4a
1.8 kB Preview Download
md5:ec8c6bffbbf313180ddac70877884c69
117.1 kB Download
md5:50f17fee9f80d33f47b565ae348e414b
150.2 kB Download
md5:4d0173d5d01e8a118369fabdbf29f3fb
1.9 kB Preview Download
md5:ac6b502ad02178be103a0de73b4a3683
117.1 kB Download
md5:6e9d4ad95ac634298faf1bcf97f3d498
150.2 kB Download
md5:5810ec909ee3436b0faf09dbaa2605b4
1.9 kB Preview Download
md5:d24cdc9ce3526af2833568973327cb7c
117.1 kB Download
md5:cda07e413ac08bc73e70961bafffb36d
153.7 kB Download
md5:7ae820a7f82fae24b9a76238c95d46fc
5.1 kB Preview Download
md5:f53c888c9262c0d2be23b903d498b87b
117.1 kB Download
md5:e5a709a7092ecb4bd2ee00a35b7d9dde
150.3 kB Download
md5:e5de80636f3592db0f3b97d22ef017af
2.0 kB Preview Download
md5:27e2f1aa0241c4c67ef8136d43fb3979
117.1 kB Download
md5:12b1f372d32fae20283a5555f077ee8a
154.0 kB Download
md5:3314d63911f1c8df592f7ddaf51059e3
5.4 kB Preview Download
md5:914e5e360eb3f70d2a6a7e91824c75bf
117.1 kB Download
md5:062d096af44d33b84f58cb63da693be5
150.2 kB Download
md5:afdc6e975a36c6c8eb17acd15a6f8c08
2.1 kB Preview Download
md5:a8938d4c39a273a2322de37a761d01c9
117.1 kB Download
md5:4e5ebf0311929ca08b10a5edbf658fd8
2.1 kB Preview Download
md5:f498081fdff243418745ef7306106f40
117.1 kB Download
md5:1e911a4c06714e4cda6530ee4899bc76
150.4 kB Download
md5:28a6e6f27d835bc9c615079966e3ed43
2.2 kB Preview Download
md5:901a8312dc7c3c01b1113ba5ec17013d
117.1 kB Download
md5:700f8d9189092ca8749b4a382c69bbcf
153.6 kB Download
md5:4ca8692fefe5f9f4df07cb4fd1abafe9
5.1 kB Preview Download
md5:5599562585583f63852dec6bf9abbb95
117.1 kB Download
md5:eaa9882fd465de9a1beb061c42ae93d7
153.8 kB Download
md5:07885fa81a51a6d78ded4c78a64f0ae7
5.2 kB Preview Download
md5:7046d655720d37f5a4f5c4668aac37c8
117.1 kB Download
md5:463f69a60c339834f5756b1d782771d4
150.5 kB Download
md5:cb6423df47fcd18227095bbffb2c0815
2.2 kB Preview Download
md5:863b2e44c494c01ab0c62500da8478d7
117.1 kB Download
md5:4f46a0b63c9566879980fd9c031e3f84
150.6 kB Download
md5:52816777fd12d7c6315a5daa6a60270f
2.3 kB Preview Download
md5:57370b74481e27066fb35a8e854347b8
117.1 kB Download
md5:751da71360d5fc89dcaf27ceb14f51eb
153.9 kB Download
md5:4bc54b6790ff144d8d8f41a73a68d0cb
5.3 kB Preview Download
md5:9a85e02c8b030c45c109188c4c2e0e1e
117.1 kB Download
md5:af2759e2a51425ba6209a98862d268ed
150.6 kB Download
md5:287bc2a762b7a93bc4ee2090abb173bd
2.3 kB Preview Download
md5:a73f31dd4056c4fc4d5ebf3cc9bff5db
117.1 kB Download
md5:66eb5e4ee4ff35a7c68ec8925ddd0016
150.7 kB Download
md5:6394a311ccbb3e6d642e6df9ddb4087d
2.4 kB Preview Download
md5:eb85fcacc114caf8179c0bae3b0bc62e
2.6 kB Download
md5:8a064185d8901f5ccc8397626e0ca91a
116.6 kB Download
md5:9ad141d7486a79038d95c7537bad2b3f
583.2 kB Download
md5:5305dfd13096d025cc9e6acc0c1aec5c
15.0 kB Download
md5:cf5a42d34edec69f6ac99cbd609221bf
1.7 kB Preview Download
md5:a279df46c34b11c89e9c6ee0c7081e98
1.5 kB Download
md5:8938e37823831606dfda2560e4564c28
6.6 kB Preview Download
md5:75770c5e8ca11c8a76eb03cdc8b6a5cd
6.6 kB Preview Download
md5:c70ee30fba914ac7d39223ebc907bf81
6.6 kB Preview Download
md5:679ebda64ded484278b337c60ab46134
6.6 kB Preview Download
md5:679ebda64ded484278b337c60ab46134
6.6 kB Preview Download
md5:679ebda64ded484278b337c60ab46134
6.6 kB Preview Download
md5:e95917a652712df6f26911b1d1e81a8d
6.6 kB Preview Download
md5:e95917a652712df6f26911b1d1e81a8d
6.6 kB Preview Download

Additional details

References

  • Gorski et al., J Phys Chem A 116, 11973 (2012) [doi:10.1021/jp309618b]
  • Neese, WIREs Comput Mol Sci 2(1), 73 (2012) [doi:10.1002/wcms.81]
  • Perdew et al., Phys Rev B 46, 6671 (1992) [doi:10.1103/PhysRevB.46.6671]
  • Perdew et al., Phys Rev Lett 77, 3865 (1996) [doi:10.1103/PhysRevLett.77.3865]
  • Vahtras et al., Chem Phys Lett 213(5-6), 514 (1992) [doi:10.1016/0009-2614(93)89151-7]
  • Weigend et al., Chem Phys Lett 294(1-3), 143 (1998) [doi:10.1016/S0009-2614(98)00862-8]
  • Weigend, Phys Chem Chem Phys 8, 1057 (2006) [doi:10.1039/B515623H]