Dataset Open Access

Local adaptation and archaic introgression shape global diversity at human structural variant loci

Yan, Stephanie M.; McCoy, Rajiv C.

Supporting data associated with the manuscript "Local adaptation and archaic introgression shape global diversity at human structural variant loci". These include:

  • structural variant genotypes (Paragraph; https://github.com/Illumina/paragraph)
  • eQTL mapping results (fastqtl permutation pass; see http://fastqtl.sourceforge.net/ for column descriptions)
  • structural variant selection scan results (Ohana; https://github.com/jade-cheng/ohana)

Files (3.5 GB)
Name Size
chr21_pruned_50_Q.matrix
md5:0e5b1016921cf5264c82d15acb2dc84a
460.7 kB Download
fastqtl_out.txt
md5:8664874969222830a3932ad12fe82a90
2.7 MB Download
selscan_50_k8_p1.out
md5:8320c99df8a6365a84b9da3ff64d40b9
28.7 MB Download
selscan_50_k8_p2.out
md5:4e4c00ace4f483cf7c8d5c9ebad0934d
28.7 MB Download
selscan_50_k8_p3.out
md5:fb8acea93f726ab5525c0f49c2e6b2bd
28.7 MB Download
selscan_50_k8_p4.out
md5:378e4a23670d5a21209e95242d6b1984
28.7 MB Download
selscan_50_k8_p5.out
md5:6438a41d3a14a97584b66bd8db124c82
28.7 MB Download
selscan_50_k8_p6.out
md5:9c6f1ec744a6d53ecc57009c4f01249e
28.7 MB Download
selscan_50_k8_p7.out
md5:b09f36c8f53609faeacab7e3d175229e
28.7 MB Download
selscan_50_k8_p8.out
md5:b4a8bb4c70207fc084cd776b2badc084
28.7 MB Download
SVs_1KGP_pgGTs_noseq.vcf.gz
md5:b4d1f73466f795fffe2e9b54c0a790ed
2.6 GB Download
SVs_paragraphFormat.vcf.gz
md5:ae612f5fd83cf0e521b1cf60757cf11a
679.7 MB Download
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