Published January 12, 2016
| Version v1
Dataset
Open
MD simulation trajectory and related files for POPC bilayer with 30 mol% of deprotonated pazePC (Berger, Gromacs 4.5.)
Authors/Creators
- 1. Aalto University
- 2. University of Southern Denmark
Description
Simulation trajectory and related files for POPC bilayer with 30mol% of pazePC in deprotonated form used in "Acyl chain disorder and azelaoyl orientation in lipid membranes containing oxidised lipids" by T. M. Ferreira, et al., https://doi.org/10.1021/acs.langmuir.6b00788.
90 POPC, 38 pazePC, 7250 water and 38 potassium molecules. Simulation time 120ns.
Force field for POPC is based on Berger model and force field for pazePC is from H. Khandelia and O. G. Mouritsen, Biophysical Journal, 2009, 96(7), 2734 – 2743, http://dx.doi.org/10.1016/j.bpj.2009.01.007.
If used, please cite approriate publications.
Files
Files
(4.3 GB)
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md5:0abb14c5893caa5a9a270f6b15103ac5
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md5:a4503240469ce83a5de80fda76e94261
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1.9 MB | Download |
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md5:06e2af27c2bb804e3258f722581a37e1
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925.8 kB | Download |
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md5:81901898957cd6b5732ee964449eef8e
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2.0 GB | Download |
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md5:3a4a676e14b8e084a2c87dba5e5ce136
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115.2 MB | Download |
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md5:5aae720eb2c66b4681590719ea49fbb5
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1.9 MB | Download |
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md5:3223eb02bc116cc01d68e41465f75a2b
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925.8 kB | Download |
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md5:0f5a9348d31b0da5f365828c6a29291f
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2.0 GB | Download |
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md5:f3b8eab29b3992c1f338770229ba208f
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1.9 MB | Download |
Additional details
References
- H. Khandelia and O. G. Mouritsen, Biophysical Journal, 2009, 96(7), 2734 – 2743, http://dx.doi.org/10.1016/j.bpj.2009.01.007.