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Published January 10, 2021 | Version v2
Dataset Open

HPA Cell Image Segmentation Dataset

Authors/Creators

  • 1. Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH - Royal Institute of Technology, Stockholm, Sweden

Contributors

Data curator (2):

  • 1. Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH - Royal Institute of Technology, Stockholm, Sweden

Description

This dataset includes annotated cell images obtained from the Human Protein Atlas (http://www.proteinatlas.org), each image contains 4 channels (Microtubules, ER, Nuclei and Protein of Interest), the cells in each image are annotated with polygons and saved into GeoJSON format produced with Kaibu(https://kaibu.org) annotation tool. This dataset is available as an example dataset for running a deep learning-based interactive annotation tools in ImJoy (https://github.com/imjoy-team/imjoy-interactive-segmentation).

Files

hpa_cell_segmentation_dataset_v2_512x512_4train_159test.zip

Files (81.9 MB)