Published January 4, 2021
| Version 1.0
Dataset
Open
Simulated water models with Apoferritin for use in cryo-EM image simulations with amorphous ice
Authors/Creators
- 1. University of Southampton
- 2. Rosalind Franklin Institute
Description
This dataset contains the atomic coordinates of several water models produced using the NAMD molecular dynamics software. The contents of each file is listed below.
- water_81_coords.pdb - water only cubic box side length 81A
- water_243_coords.pdb - water only cubic box side length 243A
- water_486_coords.pdb - water only cubic box side length 486A
- water_645_coords.pdb - water only cubic box side length 645A
- unconstrained_apo_298_coords.pdb - water and Apoferritin where Apoferritin atoms are unconstrained
- constrained_apo_298_coords.pdb - water and Apoferritin where Apoferritin atoms are constrained
- 77_constrained_apo_scaled.pdb - water and constrained Apoferritin scaled to lower water density
- 77_unconstrained_apo_scaled.pdb - water and unconstrained Apoferritin scaled to lower water density
Files
Files
(17.8 GB)
| Name | Size | |
|---|---|---|
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md5:564df0f051adfa06c5b27b21f20af7e9
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3.1 GB | Download |
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md5:4f0035b3af59b90dca8141353d6bc346
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3.1 GB | Download |
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md5:ec6f69493b00247dbcc8a7fdf44077be
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3.1 GB | Download |
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md5:5a6d236d1c63d7cafeccc120f832079e
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4.0 GB | Download |
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md5:f64698b98a084fb6d30ccc6bdcbda069
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111.3 MB | Download |
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md5:d668e18f6c47eb6f58ff2a8643fc19d7
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894.5 MB | Download |
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md5:f51490159214de459b0b39fe8a53a003
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1.4 GB | Download |
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md5:b04b3c73993f4089ae05e855cda546d2
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2.1 GB | Download |
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md5:7731dcae8f6a995e5562b4ca5184fbaf
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4.0 MB | Download |