Supplementary files for manuscript: Acacia organelle genome assembly

Supplementary files to accompany manuscript regarding genome assembly of organelles from Acacia pycnantha. 

This manuscript assembles a mitochondrial genome (the mitome) and a chloroplast genome (the plastome). Results are referred to in the manuscript, and included here. 

For each organelle genome, there are 14 assemblies in fasta format, and associated GFA format file if available (not all stages produce this file), as well as the Spades GFA from Unicycler. For each Unicycler assembly there is a set of annotation files that include GenBank and GFF3 formats, and outputs from HMMER, ARAGORN, and tRNAscan-SE. There is also a bam file of reads mapped to alternate assembly paths for the mitome to explore the 90 Kbp contig of interest. A copy of the assembly script (assembler.sh) is included and is also available at this repository - https://github.com/AnnaSyme/organelle-assembly - with instructions on how to run the script and the required inputs and tools.

(This Zenodo version is an update, with some duplicated files removed from the annotation folders, and information about the files now included.)