Published December 29, 2020
| Version v1
Dataset
Open
Data for "How Array Design Creates SNP Ascertainement Bias"
Creators
- 1. University of Goettingen
- 2. Friedrich-Loeffler-Institut
Description
The repository contains the raw SNP data in vcf format for the publication "How Array Design Creates SNP Ascertainment Bias". Note that the variants are not filtered at this timepoint. Samples starting with pl_ are pooled sequences of ~10 individuals while samples starting with i_ were individually sequenced. Please find detailed information about samples, raw sequencing data and SNP calling pipeline in the linked preprint (https://doi.org/10.1101/833541)/ publication (https://doi.org/10.1371/journal.pone.0245178). In case you need additional information, please contact johannes.geibel@uni-goettingen.de
Files
Files
(23.9 GB)
| Name | Size | Download all |
|---|---|---|
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md5:fbe880d9ac86eef9d70aeb18fa7a9b3b
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23.9 GB | Download |
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md5:6a4a43e885f17abac46d2cc5ce55c998
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853.2 kB | Download |
Additional details
Related works
- Is documented by
- Preprint: 10.1101/833541 (DOI)
- Is supplement to
- Journal article: 10.1371/journal.pone.0245178 (DOI)
References
- Geibel et al. (2019): How Array Design affects SNP Ascertainment Bias; bioRxiv 833541; doi: https://doi.org/10.1101/833541
- Geibel J, Reimer C, Weigend S, Weigend A, Pook T, Simianer H (2021) How array design creates SNP ascertainment bias. PLoS ONE 16(3): e0245178. https://doi.org/10.1371/journal.pone.0245178