Published December 10, 2020
| Version Version v1
Dataset
Open
Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data
Creators
- 1. MIVEGEC, CNRS, IRD, Université de Montpellier - Montpellier, France
- 2. Clinical Research Center, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France
- 3. Virology Laboratory, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France
- 4. Infectious Diseases Department, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France
- 5. MIVEGEC, CNRS, IRD, Université de Montpellier–Montpellier, France
Description
This upload contains data and all the scripts required to reproduce the results of the artice entitled "Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data".
Code is located within Code.zip . It contains scripts in R and Bash and launchers. Some of the scripts require data files contained within Data.zip.
Data is located within Data.zip , such as the sequences, the inferred phylogeny and the Beast XML file.