Published December 5, 2020 | Version v1

Dataset: "Probabilistic Framework for Integration of Mass Spectrum and Retention Time Information in Small Molecule Identification"

Authors/Creators

  • 1. Aalto University

Description

The SQLite database contains the pre-computed tandem mass spectra (MS2) and retention order scores used for the experiments in the publication: "Probabilistic Framework for Integration of Mass Spectrum and Retention Time Information in Small Molecule Identification" by Bach et al. (2020).

A detailed description of the database structure is given in the 'README.md' and can also be found in the code-repository associated with the publication. The database layout is illustrated in the 'db_layout.png' file.

The SQLite file 'ms_and_rt_score_DB_bach_etal_2020.db.gz' is compressed using gzip.

Files

db_layout.png

Files (2.2 GB)

Name Size
md5:3939d9e03f111be28fdef36fbcd0b3c8
374.3 kB Preview Download
md5:296fc42ade081056a0d778660c370f33
2.2 GB Download
md5:6753ea782178d72e43da8ab27b4bdd52
8.2 kB Preview Download

Additional details

Related works

Is part of
Journal article: 10.1093/bioinformatics/btaa998 (DOI)

Funding

Research Council of Finland
Machine Learning for Computational Metabolomics 310107