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Published December 2, 2020 | Version Dec2020

Dec2020 reference datasets for Mitohelper

  • 1. University of Miami
  • 2. Mississippi State University

Description

Reference datasets (Nov 2020 update) for Mitohelper (https://github.com/aomlomics/mitohelper)

Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline.

I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:

  • mitofish.all.Dec2020.tsv (660,976 records; Dec 2020 update)
  • mitofish.12S.Dec2020.tsv (37,117 records)
  • mitofish.COI.Dec2020.tsv (221,628 records)

II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:

  • 12S-seqs-derep-uniq.qza 
  • 12S-tax-derep-uniq.qza 
  • 12S-16S-18S-seqs.qza 
  • 12S-16S-18S-tax.qza 

Files

Files (2.0 GB)

Name Size
md5:1445e658b1d54c46ab942bff8d3bbe70
105.3 MB Download
md5:e1d2ef3326e48744c1389aa70af8ea01
7.3 MB Download
md5:9660fcda4a634473d25d679bb3a67379
8.2 MB Download
md5:eb50baf4b1f0d644163aab59b755eec9
471.8 kB Download
md5:1d9384583fad86bbed8ebc7f2587657d
191.0 MB Download
md5:8e212235814b2fad85bc5838b84766a6
1.2 GB Download
md5:9f5046a9824de90507afbf1013d04706
445.8 MB Download