Software Open Access
Spaert; Nicole; ian101610; Yao-Ting Huang; mrfish2468; jycisol; weco1290
Release of the version used in the manuscript. The current version works well for polishing genomes of high assembly contiguity (N50>1 Mbp). It should work well with old or new basecaller (Guppy 2.2 or earlier to Guppy 3.6). The recommended pipeline would be Racon+Medaka+Homopolish, though MarginPolish should also work well with Homopolish. It can not polish highly-fragmented MAGs yet.