There is a newer version of the record available.

Published November 30, 2020 | Version r20201130
Dataset Open

Spine Generic Public Database (Multi-Subject)

Creators

  • 1. NeuroPoly Lab, Polytechnique Montreal, Montreal, QC, Canada
  • 2. Department of Radiology, Swiss Paraplegic Centre, Nottwil, Switzerland
  • 3. Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia
  • 4. Department of Radiology, University of British Columbia, Vancouver, BC, Canada
  • 5. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
  • 6. School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
  • 7. NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom
  • 8. Department of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
  • 9. Department of Neurosurgery, Medical College of Wisconsin, Milwaukee, WI, USA
  • 10. Aix-Marseille Univ, CNRS, CRMBM, Marseille, France
  • 11. Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA
  • 12. Polytechnique Montreal, Montreal, QC, Canada
  • 13. Centre de Recherche CHUS, CIMS, Sherbrooke, Canada
  • 14. Université de Strasbourg, CNRS, ICube, Strasbourg, France
  • 15. UHB - University Hospital Brno and Masaryk University, Department of Radiology and Nuclear Medicine, Czech Republic
  • 16. McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, QC, Canada
  • 17. Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada
  • 18. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 19. Richard M. Lucas Center, Stanford University School of Medicine, Stanford, CA USA
  • 20. Spinal Cord Injury Center Balgrist, University of Zurich, Switzerland
  • 21. Institute of Nanotechnology, CNR, Rome, Italy
  • 22. Department of Radiology, Juntendo University School of Medicine, Tokyo, Japan
  • 23. Brain MRI 3T Research Centre, IRCCS Mondino Foundation, Pavia, Italy
  • 24. MR Clinical Science, Philips Healthcare, Markham, ON, Canada
  • 25. CREF - Museo storico della fisica e Centro studi e ricerche Enrico Fermi, Rome, Italy
  • 26. Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA
  • 27. Multimodal and functional imaging laboratory, Central European Institute of Technology (CEITEC), Brno, Czech Republic
  • 28. Department of Radiology, Toho University Omori Medical Center, Tokyo, Japan
  • 29. Department of Radiology, the University of Tokyo, Tokyo, Japan
  • 30. Interdepartmental Neuroscience Program, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
  • 31. Centre of Precision Rehabilitation for Spinal Pain (CPR Spine), School of Sport, Exercise and Rehabilitation Sciences, College of Life and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom
  • 32. BioMedical Engineering and Imaging Institute (BMEII), Department of Radiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
  • 33. Institute of Bioengineering/Center for Neuroprosthetics, Ecole Polytechnique Fédérale de Lausanne, Geneva, Switzerland
  • 34. Institute of Diagnostic and Interventional Neuroradiology, Carl Gustav Carus University Hospital, Technische Universität Dresden, Dresden, Germany
  • 35. CAS Key Laboratory of Behavioral Science, Institute of Psychology, Chinese Academy of Sciences, Beijing, China
  • 36. CUBRIC, Cardiff University, Wales, UK
  • 37. Division of Clinical Behavioral Neuroscience, Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA
  • 38. IRCCS Fondazione Don Carlo Gnocchi ONLUS, Milan, Italy
  • 39. Departments of Radiology, Pathology & Laboratory Medicine, Physics & Astronomy; International Collaboration on Repair Discoveries (ICORD), University of British Columbia, Vancouver, BC, Canada
  • 40. Division of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Stanford, CA, USA
  • 41. Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 42. Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
  • 43. Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases, Hospital Clinic Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) and Universitat de Barcelona, Barcelona, Spain
  • 44. Fondation Campus Biotech Genève, 1202, Geneva, Switzerland
  • 45. Department of Radiology, Vanderbilt University Medical Center, Nashville, TN USA
  • 46. UCSF Weill Institute for Neurosciences, Department of Neurology, University of California San Francisco, San Francisco, CA, USA
  • 47. Wellcome Centre For Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom
  • 48. Neuroradiology Section, Vall d'Hebron University Hospital, Barcelona, Spain
  • 49. Department of Brain and Behavioural Sciences, University of Pavia, Pavia, Italy
  • 50. School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, Brisbane, Australia
  • 51. University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA
  • 52. Department of Neurology, Faculty of Medicine and Dentistry, Palacký University and University Hospital Olomouc, Olomouc, Czech Republic

Description

About this dataset

This dataset was acquired using the spine-generic protocol on multiple subjects, multiple sites and multiple MRI vendors and models. The list of subjects is available in participants.tsv.

The contributors have the necessary ethics & permissions to share the data publicly. The dataset does not include any identifiable personal health information, including names, zip codes, dates of birth, facial features on structural scans.

The dataset is about 10 GB and it is structured according to the BIDS convention.

Download

We are using a tool to manage large datasets called git-annex. To download this dataset, you need to have `git` installed, and also install `git-annex` at version 8. Then run:

git clone https://github.com/spine-generic/data-multi-subject && \
cd data-multi-subject && \
git annex init && \
git annex get

You may substitute `git annex get` with more specific commands if you are only interested in certain subjects. For example:

git annex get sub-nwu01/ sub-nwu03/ sub-nwu04/ sub-oxfordFmrib04/ sub-tokyoSkyra*/


Analysis

The instructions to process this dataset are available in the spine-generic documentation.

Contributing

If you wish to contribute to this dataset please see the wiki. Thank you for your contribution 🎉 

Files

spine-generic/data-multi-subject-r20201130.zip

Files (3.5 MB)

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md5:fc2f623085c5a51c66cc93e3632710af
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Additional details

Related works

Is supplement to
https://github.com/spine-generic/data-multi-subject/tree/r20201130 (URL)