Published November 22, 2020 | Version v1

3D models of mouse embryonic development (stl, converted from EMAP)

  • 1. EPFL

Description

A collection of readily-usable volumetric models for all tissues and stages of mouse peri-implantation development as extracted from the eMouse Atlas Project (E5.0 to E9.0), as well as custom-made models of all pre-implantation stages (E0 to E4.0). These models have been converted to a commonly used 3D format (.stl), and are provided in ready-made files for digital exploration and illustration.

Specifically:

  1. individual .stl models of embryonic subcomponents for each developmental stage (e.g. epiblast, visceral endoderm; 1 folder per EMAP embryonic stage)
  2. ready-made .blend files where such components have been reassembled as a full embryo model, and in a scene with pre-prepared light sources and aligned camera (1 file per embryonic stage)
  3. a .blend file with all embryonic models provided arranged in a temporal lineup; and a .blend file with a "starter-pack" of pre-made materials to use for easy illustration.

Also included are two data tables:

  1. "EMAP_key.xlsx" indicating the source of its model, and the embryonic stage corresponding to each Theiler Stage
  2.  "EMAP_partslist.xlsx" containing the original name of each embryonic component provided (as used in EMAP), and the corresponding name used in this dataset.

Files

01_Individual stl components.zip

Files (583.3 MB)

Name Size
md5:efa2d18240eb191ff4cc3e91212e4d5f
48.3 MB Preview Download
md5:2895bcb554f040634aed130819b280bb
258.6 MB Preview Download
md5:4e31e8b8ba58dea39cf362bc5f94e508
274.0 MB Preview Download
md5:bfc5ef43dd942065c393f5dbc857c196
9.5 kB Download
md5:a8f0f3776e6ebc563e7bc8506e33a9f7
16.6 kB Download
md5:9861771f67cc550de112d4b8a2371a8b
1.4 MB Preview Download
md5:3f7df5f2565851eca3664becc663a78f
943.3 kB Preview Download

Additional details

Related works

Is documented by
Preprint: 10.1101/2020.11.23.393991 (DOI)