Published November 18, 2020 | Version 1.0.0
Dataset Open

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks

Authors/Creators

  • 1. Toxalim (Research Centre in Food Toxicology), Université de Toulouse, INRAE, ENVT, INP-Purpan
  • 2. IRCM, Institut de Recherche en Cancérologie de Montpellier, INSERM U1194, Université de Montpellier

Description

Matlab output files and raw data used for the evaluation presented in "DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks" https://github.com/MetExplore/dexom

Files

dexom-results.zip

Files (3.1 GB)

Name Size
md5:a11983ac79e40da74c90e85c3e45f1e8
3.1 GB Preview Download
md5:5436993fe7f0bf32375b31e9b759e390
2.2 kB Preview Download

Additional details

Related works

References
Preprint: 10.1101/2020.07.17.208918 (DOI)

References

  • Rodríguez-Mier, Pablo, et al. "DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks." bioRxiv (2020).
  • Rintala, Eija, et al. "Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae." BMC genomics 10.1 (2009): 461.
  • Machado, Daniel, and Markus Herrgård. "Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism." PLoS Comput Biol 10.4 (2014): e1003580.
  • Opdam, Sjoerd, et al. "A systematic evaluation of methods for tailoring genome-scale metabolic models." Cell systems 4.3 (2017): 318-329.
  • Duarte, Natalie C., et al. "Global reconstruction of the human metabolic network based on genomic and bibliomic data." Proceedings of the National Academy of Sciences 104.6 (2007): 1777-1782.
  • Heavner, Benjamin D., et al. "Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance." Database 2013 (2013).