Published December 15, 2020 | Version v1

Phenanthrene: TD-DFTB datasets, pre-trained SchNet models and initial coniditions for TSH

Authors/Creators

  • 1. Université Toulouse III - Paul Sabatier (UPS)

Description

Data associated with the paper entitled

On application of Deep Learning to simplified quantum-classical dynamics in electronically excited states

  1. Three TD-DFTB datasets (sX_10_force.db) have been produced using the Atomic Simulation Environment (ASE) coupled to deMon-Nano code for the linear response Time-Dependent Density Functional based Tight-Binding (TD-DFTB) calculations. Each dataset contains 10000 TD-DFTB electronic structure calculations for a given excited singlet state (S2/S3/S4) of a neutral phenanthrene molecule. Each database entry contains Cartesian atomic coordinates as well as potential energy and atomic forces for a given excited state at a given geometry. Since ASE has been used, all physical quantities are stored in the corresponding units (e.g. eV for energy or eV/Å for forces). The file format is SQLite as provided by the ASE;
  2. Three pre-trained Deep Learning models (best_model_sX) for a given excited singlet state have been produced using SchNetPack package, which implements the SchNet architecture for atomistic simulations. Each model has been trained using the corresponding TD-DFTB dataset from #1. The file format is binary as provided by the SchNetPack;
  3. 500_init_conditions.tar.gz  contains 500 initial conditions (Cartesian coordinates and velocities), which can be used for Trajectory Surface Hopping (TSH) simulations with or without the pre-trained models from #2.

 

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Additional details

Funding

European Commission
EUROPAH - The Extensive and Ubiquitous Role of Polycyclic Aromatic Hydrocarbons (PAHs) in Space 722346

References

  • K.T. Schütt, P. Kessel, M. Gastegger, K.A. Nicoli, A. Tkatchenko, K.-R. Müller. SchNetPack: A Deep Learning Toolbox For Atomistic Systems. Journal of Chemical Theory and Computation 15 (1), pp. 448-455. 2018.
  • Ask Hjorth Larsen, Jens Jørgen Mortensen, Jakob Blomqvist, Ivano E. Castelli, Rune Christensen, Marcin Dułak, Jesper Friis, Michael N. Groves, Bjørk Hammer, Cory Hargus, Eric D. Hermes, Paul C. Jennings, Peter Bjerre Jensen, James Kermode, John R. Kitchin, Esben Leonhard Kolsbjerg, Joseph Kubal, Kristen Kaasbjerg, Steen Lysgaard, Jón Bergmann Maronsson, Tristan Maxson, Thomas Olsen, Lars Pastewka, Andrew Peterson, Carsten Rostgaard, Jakob Schiøtz, Ole Schütt, Mikkel Strange, Kristian S. Thygesen, Tejs Vegge, Lasse Vilhelmsen, Michael Walter, Zhenhua Zeng, Karsten Wedel Jacobsen The Atomic Simulation Environment—A Python library for working with atoms, J. Phys.: Condens. Matter Vol. 29 273002, 2017